| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0726 |
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| Symbol | |
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| ID | 6162962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 773502 |
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| End bp | 774950 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663476 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001789764 |
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| Protein GI | 171057415 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0919196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCA TGGACAACCC CACCGCCTTG CCGCGCTACC AGCAGCTCGC CGATGACCTC
GGCGAGGCCA TGCGGTCCGG CGTGCTGCGC CCGGGCGATC GCCTGCCCTC GGTGCGCGAG
ACCTGTCGCG AACGCGGCCT CAGCCCGGCC ACCGTGTTCC ATGCCTACGG ACAGCTGGAG
GCCGAGGGCC TGATCGAGGC ACGGCCGCGC TCGGGCTACT TCGTGTGCAC GCCGCGGCGG
GCCCTGCGGG CGCCACCGCG AGCCGCACCC GCCTCGTCGA CCGCGCAGCC GGTGGCCGTC
AGCGCCCTGG TGTTCGACCT GCTGGGTTCG ACCTCCCGGC CCGGCGTGGT GCCGCTGGGT
TCGGCGTTTC CGGCGGCGCA CCTGTTTCCG TTCGAGGCGC TGGCGCGCAG CGGCGCACGC
ACCATGCGCA AGCTCGGGCC GGCGCAGATC ACCGGCGCGC TGCTGTCGGG CGACGACGGA
CTGCGCCAGG CCCTGCGACG CCGTTACGCG CTGCACGGCG TGGCGCTCGC CGACGACGAA
CTCGTCATCA CCAACGGCGC GATGGAGGCG CTCAACCTGT GCCTGCAGGC CGTCACGCAG
CCGGGTGACG TGGTGGTGGT CGAGTCGCCC ACCTTCTATG CCGCGCTGCA TGCGCTGGAA
CGCCTGCACC TGCAGGCGGT GGAGGTGCGC ACCGATCCGC AAGAGGGGGT CGATCTGGCC
GCGCTGGAAG CCCTGCTGGC CGCGCAGCCG GTGGCCGCCT GCTGGTTCAT GCCCAGCTTC
CAGAACCCGC TCGGTGCGCT GATGCCCGCC GCGCGCAAGC AGGCGCTGGT CGAACTGCTG
GCACGTCACC GCGTGCCACT GATCGAGGAC GACGTGTACG GCGAATTGCA CGCCGGTGCG
CGCCGTCCCC TGCCCGCCAA GGCCTTCGAC CGCGACGGTG GCGTGCTGCA TTGCGCGTCG
TTCTCCAAAT GCCTGGCGCC GGGCTACCGA GTCGGCTGGG CCGCCGCCGG GCGCTACACC
GCCCAGGTGC AGCGGCTCAA GATGATGAGC TCGCTGGCGA CCGCGTTGCC GCCGCAGATG
GCCTTGGCCG ACTACCTCGG CCAGGGCGTC TACGACCGGC ACCTGCGCCA GCTGCGGGCA
GCGCTGGCCG CACAGCAGCG GCGGGCGCTG CGGCTGATCG AGCGGCACTT CCCCGCCGGC
ACGCGCGTGA CGCGGCCCAG CGGCGGCTAC TTCCTGTGGC TCGACCTGCC CGAGGCCGTC
GATGGCGTCA CGCTGCACCG GCGCGCGATG GCGCTGTCGA TCAGCACCGC ACCGGGCGTG
CTGTTCTCGG CCGATGCGCG CTTTGCGCAC CACCTGCGGC TCAATGTGGG CCACCCGGAC
GACCCGCGCG TGGACGCGGC CTTGCGCACG CTGGGCGAGC TGGCCTGCGA GATGGCGGCG
GGCCGTTGA
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| Protein sequence | MLTMDNPTAL PRYQQLADDL GEAMRSGVLR PGDRLPSVRE TCRERGLSPA TVFHAYGQLE
AEGLIEARPR SGYFVCTPRR ALRAPPRAAP ASSTAQPVAV SALVFDLLGS TSRPGVVPLG
SAFPAAHLFP FEALARSGAR TMRKLGPAQI TGALLSGDDG LRQALRRRYA LHGVALADDE
LVITNGAMEA LNLCLQAVTQ PGDVVVVESP TFYAALHALE RLHLQAVEVR TDPQEGVDLA
ALEALLAAQP VAACWFMPSF QNPLGALMPA ARKQALVELL ARHRVPLIED DVYGELHAGA
RRPLPAKAFD RDGGVLHCAS FSKCLAPGYR VGWAAAGRYT AQVQRLKMMS SLATALPPQM
ALADYLGQGV YDRHLRQLRA ALAAQQRRAL RLIERHFPAG TRVTRPSGGY FLWLDLPEAV
DGVTLHRRAM ALSISTAPGV LFSADARFAH HLRLNVGHPD DPRVDAALRT LGELACEMAA
GR
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