Gene Lcho_0713 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0713 
Symbol 
ID6163546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp761568 
End bp762644 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content64% 
IMG OID641663465 
Productporin 
Protein accessionYP_001789753 
Protein GI171057404 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.788227 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA TCGTCATCGT GTTGGGCCTT GCTTCGCTGG GACTGAGTCA CGGCGCCCAT 
GCCCAAAGCA GTGTTTCAGT GTCCGGCGTC CTGGATGCCG GGCTGCGAAA CGTCAGCAAC
AGCGGCCTGC CCGCACTGAC CACCCTGGTC AGCGGGTCGA ATGCCACGAG CCGTCTGGCG
GTTCAGGGGA CCGAAGACAT CGGTGGTGGC CTGTCTGCGG GCTTTCATCT GGAGCATGGT
CTGAATGTGG CCAATGGCAC GGCCACGACA GCGACTCAAT TCTGGGATCG GCGGGCGACG
GTCAGCCTGG CCGACAGCCG TTTCGGCGAA TGGCGCCTGG GCCGGGATTT CATCCCGACC
TACACGAACT GGAGCCGTTA TGACCCCTTC GGTCACGTCG GGGCGGCCAG TGCCGGCAAC
CTGGTGTCGA CCACGCCGGT CGGGCCGTTG CGCAATTCAT TCGGCACCAA CCCGAACACG
ACGGTTCGGG CCAACAGCGA GGTTCAATGG CTGCTCCCCA AGAATCTCGG TGGCGTTGAA
GGATCGGTGA TGCTCACCAA GGCTGGCGAC ACCTCCGCAG CGAGCGGCGC CAACAACGTG
AAAGGTTTCC GCCTGGGTTG GAGTGGCGGA CCGCTCAGCG TCGGATTGGC CCATACGCGC
ACTCGGAACG ATCTGACCGT GGCCGGCGCC CTGACCGATT CATCCGTCGG TGGTATCTAC
AACTTCGGAG TCGTGCGGCT CAGCGCCGTG GTCCGGCACA TCAAGCAGGC CGATGCCAAG
CAGACCAACC AGCTGCTTGG CGCCTGGGTG CCTGTGGGCG CGGGTGAGAT CCGTCTTTCA
GTGCAGCGGG CAGACCTGTC CGGGCGTGTC GGAGCGGCCG TGGTGGATGC GAATGATGCG
GTTCAAGTCG GCCTGGGTTA TGTCCGTTCG CTGAGCAAGC GCACGGCGCT CTACACGACC
TGGGCACGCA TCGCCAACAG CGGAGCGGGC ACGCGAACCA TCAGTGGCGG CACCAGCGGA
ATGGCTGGTG GCGGCACGTC GAAGGCGATC GAACTCGGCC TGCGGCACAA CTTCTGA
 
Protein sequence
MEKIVIVLGL ASLGLSHGAH AQSSVSVSGV LDAGLRNVSN SGLPALTTLV SGSNATSRLA 
VQGTEDIGGG LSAGFHLEHG LNVANGTATT ATQFWDRRAT VSLADSRFGE WRLGRDFIPT
YTNWSRYDPF GHVGAASAGN LVSTTPVGPL RNSFGTNPNT TVRANSEVQW LLPKNLGGVE
GSVMLTKAGD TSAASGANNV KGFRLGWSGG PLSVGLAHTR TRNDLTVAGA LTDSSVGGIY
NFGVVRLSAV VRHIKQADAK QTNQLLGAWV PVGAGEIRLS VQRADLSGRV GAAVVDANDA
VQVGLGYVRS LSKRTALYTT WARIANSGAG TRTISGGTSG MAGGGTSKAI ELGLRHNF