Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0713 |
Symbol | |
ID | 6163546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 761568 |
End bp | 762644 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641663465 |
Product | porin |
Protein accession | YP_001789753 |
Protein GI | 171057404 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.788227 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGA TCGTCATCGT GTTGGGCCTT GCTTCGCTGG GACTGAGTCA CGGCGCCCAT GCCCAAAGCA GTGTTTCAGT GTCCGGCGTC CTGGATGCCG GGCTGCGAAA CGTCAGCAAC AGCGGCCTGC CCGCACTGAC CACCCTGGTC AGCGGGTCGA ATGCCACGAG CCGTCTGGCG GTTCAGGGGA CCGAAGACAT CGGTGGTGGC CTGTCTGCGG GCTTTCATCT GGAGCATGGT CTGAATGTGG CCAATGGCAC GGCCACGACA GCGACTCAAT TCTGGGATCG GCGGGCGACG GTCAGCCTGG CCGACAGCCG TTTCGGCGAA TGGCGCCTGG GCCGGGATTT CATCCCGACC TACACGAACT GGAGCCGTTA TGACCCCTTC GGTCACGTCG GGGCGGCCAG TGCCGGCAAC CTGGTGTCGA CCACGCCGGT CGGGCCGTTG CGCAATTCAT TCGGCACCAA CCCGAACACG ACGGTTCGGG CCAACAGCGA GGTTCAATGG CTGCTCCCCA AGAATCTCGG TGGCGTTGAA GGATCGGTGA TGCTCACCAA GGCTGGCGAC ACCTCCGCAG CGAGCGGCGC CAACAACGTG AAAGGTTTCC GCCTGGGTTG GAGTGGCGGA CCGCTCAGCG TCGGATTGGC CCATACGCGC ACTCGGAACG ATCTGACCGT GGCCGGCGCC CTGACCGATT CATCCGTCGG TGGTATCTAC AACTTCGGAG TCGTGCGGCT CAGCGCCGTG GTCCGGCACA TCAAGCAGGC CGATGCCAAG CAGACCAACC AGCTGCTTGG CGCCTGGGTG CCTGTGGGCG CGGGTGAGAT CCGTCTTTCA GTGCAGCGGG CAGACCTGTC CGGGCGTGTC GGAGCGGCCG TGGTGGATGC GAATGATGCG GTTCAAGTCG GCCTGGGTTA TGTCCGTTCG CTGAGCAAGC GCACGGCGCT CTACACGACC TGGGCACGCA TCGCCAACAG CGGAGCGGGC ACGCGAACCA TCAGTGGCGG CACCAGCGGA ATGGCTGGTG GCGGCACGTC GAAGGCGATC GAACTCGGCC TGCGGCACAA CTTCTGA
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Protein sequence | MEKIVIVLGL ASLGLSHGAH AQSSVSVSGV LDAGLRNVSN SGLPALTTLV SGSNATSRLA VQGTEDIGGG LSAGFHLEHG LNVANGTATT ATQFWDRRAT VSLADSRFGE WRLGRDFIPT YTNWSRYDPF GHVGAASAGN LVSTTPVGPL RNSFGTNPNT TVRANSEVQW LLPKNLGGVE GSVMLTKAGD TSAASGANNV KGFRLGWSGG PLSVGLAHTR TRNDLTVAGA LTDSSVGGIY NFGVVRLSAV VRHIKQADAK QTNQLLGAWV PVGAGEIRLS VQRADLSGRV GAAVVDANDA VQVGLGYVRS LSKRTALYTT WARIANSGAG TRTISGGTSG MAGGGTSKAI ELGLRHNF
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