Gene Lcho_0665 details

Gene Information

• Locus tag: Lcho_0665
• ID: 6163899
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 719852
• End bp: 720454
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641663416
• Product: rhomboid family protein
• Protein accession: YP_001789705
• Protein GI: 171057356
• COG category: [R] General function prediction only
• COG ID: [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 63
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCCAGC TTCCTCCCGT CACCAAGGCG CTGATGCTGA TCTGCACAGC GATGTTCTGT 
GTCCAGCTGC TGTTCGGGTC GTGGCTGGAG GGCCTGTTCG CGTTGTGGCC GCTCGGCAGC 
GGGCTGTTCA TGCCCTGGCA GCCGCTGACC CATGCCTTCC TGCATGGCGA CCCGCTGCAC 
CTGTTCTTCA ACATGTTCGG CCTGTGGATG TTCGGCTCCG AGATCGAGAT GATCTGGGGC 
CGCAAGCGCT ACTGGCATTT CCTGCTCGCC AGTGCCGTGG CCGGTGCGGT GGCGCAGATG 
CTGGTGTCGC TGCTCGGCAT TCCGATGGGG CCGACCGTCG GTGCTTCGGG TGCGCTGTAC 
GGCCTGCTGC TGGCCTTCGG GATGATGTTT CCCGAGCGCA TCATCATGCC GCTGTTCCCG 
CCGATCCCGA TGAAGGCGAA GATCTTCGTC GTGGTGTTCG GCGGCATCGC GCTGCTGTCG 
GGCATCTTCA GCCCGACCGG GGGTGTCGCC CACTTCGCCC ACCTCGGCGG CATGCTCGGC 
GGCTGGCTGA TGATCCGCTA CTGGCGCGGT CAGGCGCCGT TCCCCTCGCG CCGCCGGCGC 
TGA 

 

Protein sequence

MPQLPPVTKA LMLICTAMFC VQLLFGSWLE GLFALWPLGS GLFMPWQPLT HAFLHGDPLH 
LFFNMFGLWM FGSEIEMIWG RKRYWHFLLA SAVAGAVAQM LVSLLGIPMG PTVGASGALY 
GLLLAFGMMF PERIIMPLFP PIPMKAKIFV VVFGGIALLS GIFSPTGGVA HFAHLGGMLG 
GWLMIRYWRG QAPFPSRRRR