Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0622 |
Symbol | |
ID | 6160186 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 670102 |
End bp | 670653 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641663372 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001789662 |
Protein GI | 171057313 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.844437 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATCA TCCGCACCGA CATCGCCGAC GTGCTGATCA TCGAACCCAA GGTGTTCGGT GACGCACGCG GCTTCTTCAT GGAAAGCTGG AACCAGAGCC GCTTCGACGC CGCCGTCGGC AGCCCGGTCC GCTTCGTTCA GGACAACCAC AGCCGCTCGG CCCGCGGCGT GCTGCGCGGC CTGCACTACC AGCTGCCGCC GCACGCGCAG GGCAAGCTGG TGCGTGTCAC CCGCGGCGTG GTGTTCGACG TGGCGGTCGA TCTGCGTCGC AGCAGTCCGA CCCTGGGGCG CTGGATCTGT ACCGAACTCA GCGCAGATAA CCACCGCGAG CTCTGGATCC CGCCCGGTTT TGCGCATGGA TTCATGGTGC TGAGCGACAG CGCCGACTTC CTCTACAAGA CCACCGACTA CCACGCCCCG GACTGCGAAG CCGCCGTGCG CTGGGACGAC CCCGAGCTGG CCATCGCCTG GCCCGCGCTC GACACGCCGC CGCTGCTGTC GGCCAAGGAC CAGCAGGCGC CCGGCTGGCG CGAGGCCCGC TTGTTCGACT GA
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Protein sequence | MNIIRTDIAD VLIIEPKVFG DARGFFMESW NQSRFDAAVG SPVRFVQDNH SRSARGVLRG LHYQLPPHAQ GKLVRVTRGV VFDVAVDLRR SSPTLGRWIC TELSADNHRE LWIPPGFAHG FMVLSDSADF LYKTTDYHAP DCEAAVRWDD PELAIAWPAL DTPPLLSAKD QQAPGWREAR LFD
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