Gene Lcho_0611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0611 
Symbol 
ID6159858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp659792 
End bp660784 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content69% 
IMG OID641663361 
Product3-oxoacyl-(acyl carrier protein) synthase III 
Protein accessionYP_001789651 
Protein GI171057302 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value2.55652e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCACCC ACCTGCCCCG TTATTCGCGC ATCACCGGAA CCGGCAGCTC GCTGCCGCCG 
CGTCGACTGT CCAACGCCCA GCTGACCGAA GAACTCGCTG CGCGTGGCAT CGAGACGTCG
GACGAATGGA TCGTCGAGCG CACCGGCATC CGCGCGCGCC ACTTCGTCGA TGCCGGCGTC
AATTCGAGCG ACCTGGCGGT CGAGGCGGGG CGTCACGCCA TCGAATCGGC CGGCCTGCAG
CCGTCCGACA TCGACCTGAT CATCGTCGCC ACGTCGACGC CGGACATGGT GTTCCCGTCC
AACGCCTGCA TCGTCCAGCG CAAGCTCGGC ATCGTCAACG GCGCGCCGGC TTTCGACGTG
CAGGCGGTGT GCTCGGGCTT CATCTACGCG ATGACGATGG CCGATGCGCT GATCCGCACC
GGCAGCGCCC GCAACGCCCT GGTGATCGGC GCCGAGGTGT TCTCGCGCAT CCTCGACTTC
ACCGACCGCA CCACCTGCGT GCTGTTCGGC GACGGCGCGG GCGCGGTGGT GCTGTCGGCC
AGCGACACCC CCGGCATCCT GGCCACCGAC ATGCACGCCG ATGGCCGGCA TGTCGAGATC
CTGTGCGTGC CCGGCACCGT CTCGGGCGGG CAGATCCTCG GCGATCCGCT GCTCAAGATG
GACGGCCAGG CGGTCTTCAA GCTGGCCGTG GGCGTGCTCG AAAGTGCCGC GCGGGCCGTG
CTGGCCAAGG CCGGCAAGGA CAGCAGCGAC ATCGACTGGC TGATCCCGCA CCAGGCCAAC
ATCCGCATCA TGCACGGCAC GGCGCGCAAG CTGAAGCTGC CGCTGGACAA GCTGATCGTC
ACGGTCGACG AGCACGGCAA CACGTCGGCC GCATCCATCC CGCTGGCGCT CGACCAGGCG
GTGCGCAGCG GTCGCGTCCA GCGCGGCCAG ACCCTGATGC TCGAAGGCGT CGGCGGCGGC
TTCACCTGGG GCGCCGTACT CGTCGAGTTC TGA
 
Protein sequence
MTTHLPRYSR ITGTGSSLPP RRLSNAQLTE ELAARGIETS DEWIVERTGI RARHFVDAGV 
NSSDLAVEAG RHAIESAGLQ PSDIDLIIVA TSTPDMVFPS NACIVQRKLG IVNGAPAFDV
QAVCSGFIYA MTMADALIRT GSARNALVIG AEVFSRILDF TDRTTCVLFG DGAGAVVLSA
SDTPGILATD MHADGRHVEI LCVPGTVSGG QILGDPLLKM DGQAVFKLAV GVLESAARAV
LAKAGKDSSD IDWLIPHQAN IRIMHGTARK LKLPLDKLIV TVDEHGNTSA ASIPLALDQA
VRSGRVQRGQ TLMLEGVGGG FTWGAVLVEF