Gene Lcho_0607 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0607 
Symbol 
ID6159885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp656341 
End bp657585 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content65% 
IMG OID641663357 
Product3-oxoacyl-(acyl-carrier-protein) synthase 2 
Protein accessionYP_001789647 
Protein GI171057298 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase 
TIGRFAM ID[TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.70362e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACTCGTC GCCGTATCGT CGTGACCGGA CTTGGCATTG TTTCCCCGAT CGGGAACACG 
GTTGCCGAGT CCTGGGACAA CCTGATCGCT GGCCGTTCCG GCATCGACCA CGTCACCCGC
TTTGACGCGG CCAATCTGGC CGTGCGCTTC GCTGGCGAAG TCAAAGGCTT CAATATCGAG
GATTACATCC CCGCCAAGGA AGCCCGCCAC ATGGACGCCT TCATCCACTT CGGCATTGCG
GCATCGCTGC AGGCCGTGCG GGATTCGGGG CTGCCCACCG GCGACGCGCT GACCGAGGAG
CTGGCCGAGC GCATCGGCGT GATGGTGGGC TCGGGCATCG GCGGCCTGCC GATGATCGAG
AACACCCACG ACGAGTACCG CGAGCGTGGG CCGCGGCGCA TTTCCCCGTT TTTCGTACCC
GCCTCGATCA TCAACATGAT CTCCGGACAT GTGTCGATCA AGTGCGGCTA CAAGGGTCCC
AACCTGGCGA TGGTGACGGC CTGCACCACC GGCCTGCACA GCATCGGCAT GGCGGCACGG
ATGATCGCGC ACGGCGATGC CGACGTGATG ATCGCCGGCG GCGCGGAGTC GACCATCTCG
CCGCTGGGCA TCGGCGGTTT CGCCTCGGCG AAGGCGCTTT CGACCCGCAA TGACGACCCC
AAGGCCGCAT CGCGCCCCTG GGATCGCGAT CGCGACGGCT TCGTGCTCGG CGAAGGTGCC
GGCGTGATGG TGGTCGAAGA ATACGAACAC GCCAAGAAGC GTGGCGCCAA GATCTACGCC
GAACTGACCG GTTTCGGCAT GACGGGCGAT GCGTATCACA TGACGGCACC CAACGTCGAC
GGCCCGCGCC GCTCGATGCA GCTCGCGCTG AAGGATGCCG GCGTCAACGC CTCGGACGTC
CAGTTCATCA ACGCCCACGG CACCTCGACG CCGCTGGGTG ACGCCAACGA GACCAACGCG
ATCAAGCTCG CGTTCGGTGA CCACGCCAAG AAGCTGGTGG TGAACTCGAC CAAGTCGATG
ACCGGCCATC TGCTGGGCGG CGCCGGCGGC ATCGAGTCGA TCTTCACGGT GCTGGGCCTG
TACCACCAGA TCTCGCCGCC GACGATCAAC CTGGACAACC AGGATCCGGC CTGCGACCTC
GACTACTGCG CCAACACGGC GCGTGAGATG AACATCGAGG TGGCGGTCAA GAACAACTTC
GGCTTCGGCG GCACCAACGG CACGCTGGTG TTCCGCCGCG TCTGA
 
Protein sequence
MTRRRIVVTG LGIVSPIGNT VAESWDNLIA GRSGIDHVTR FDAANLAVRF AGEVKGFNIE 
DYIPAKEARH MDAFIHFGIA ASLQAVRDSG LPTGDALTEE LAERIGVMVG SGIGGLPMIE
NTHDEYRERG PRRISPFFVP ASIINMISGH VSIKCGYKGP NLAMVTACTT GLHSIGMAAR
MIAHGDADVM IAGGAESTIS PLGIGGFASA KALSTRNDDP KAASRPWDRD RDGFVLGEGA
GVMVVEEYEH AKKRGAKIYA ELTGFGMTGD AYHMTAPNVD GPRRSMQLAL KDAGVNASDV
QFINAHGTST PLGDANETNA IKLAFGDHAK KLVVNSTKSM TGHLLGGAGG IESIFTVLGL
YHQISPPTIN LDNQDPACDL DYCANTAREM NIEVAVKNNF GFGGTNGTLV FRRV