| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0603 |
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| Symbol | |
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| ID | 6159881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 653388 |
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| End bp | 654551 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663353 |
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| Product | putative sigma E regulatory protein, MucB/RseB |
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| Protein accession | YP_001789643 |
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| Protein GI | 171057294 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3026] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000000000201809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAGCGCA CGATCGGGTC GATCGAACGG CCACCGTCAC GCCAGCGCCC GCTGCGGCCC
CTGGCGATCG CCGGCTTGTG CTGGGCCGCG CTGGGCGCGC AGTCGGCCGT CCTGGCAGCG
CAGCCGGCAA CGGGGACGGT GGCATCGGCA CAGCCCGCGG CCTCGGCGCC GTCGAGCCAC
CCGGATCCGG CGACCGTGAT CCGGCGCATC CAGGATGCGG CCAACCGCCA CAGCTTCAGC
GGCACCTTCG TCGTCAGCGC CGGCGGGGCC ATGACGAGCC TGCGCATCAC CCACGTCAGC
GACGGCCACA ACCAGATCGA GCGTGTCGAG ACGCTCGACG GTCAGATGCG CCAGGTCTAT
CGCCACAACG ATCTGGTGCA TGTGCTGTGG CCTCGCAGTC ACGCCGCCAT CATCGAGCAC
CGCGACCTCG GCCTGGGTTA CCCGGCCGTG TTGCAGACGG GTTCGGCCGC CCGGCTCGAC
ATGTACGAGC TCAAGAGCGC CGGCATCGAC CGGGTCGCCG GACTGGAGGC CGAGGTGCTG
CAGCTGCGCC CGCGTGACGC GCACCGCTAC GGCCAGCGCC TGTGGCTCGA ACGCCAGACC
GGCCTGCTGC TGCGCACCGA CATCCTCGGC CCGCAGGGCG AGCTGATCGA AAGCGCCGGC
TTTTCCGAGC TGAAGTGGTC GGCCCGGTCG CAATCGCAGA CGCAGGCGCA ATCGCAGACC
CTGCTCGCCG AGATGCACCG CCTCAAGGGC TACCGCATCG AGCGGCCCAA GCTGACGCAC
ACCGAACTCG AACGCGAAGG CTGGATGCTG CGCACGCCGG TGGCCGGTTT CAGGGTGCTG
CACACCTACG CGCATCCCCC CGGCCTGCCG TCGCACGGCG CGCACGCGCC CGACGCGGTG
CGCACCGCAT CGGGCGACGC AGCAGCACCC AACCCGCAAG GTGGCGTGCT GCAGGCGGTG
TTCAGCGACG GCCTGACGAC GGTCTCGCTG TTCATCGAGC GCTACGACGC CGGCCGGCAT
CAGCGCGAGG CGCCGGCGGC CAGCCAGGGC GCGACCCAGG CGATCGGCCA GCGCCATGGC
GACTGGTGGA TCACGGCGGT CGGCGACGTG CCGCGCGCCA CGCTGCGCCA GTTTGCGGCG
CAGATCGAGC GTCGCAAGCC TTGA
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| Protein sequence | MKRTIGSIER PPSRQRPLRP LAIAGLCWAA LGAQSAVLAA QPATGTVASA QPAASAPSSH
PDPATVIRRI QDAANRHSFS GTFVVSAGGA MTSLRITHVS DGHNQIERVE TLDGQMRQVY
RHNDLVHVLW PRSHAAIIEH RDLGLGYPAV LQTGSAARLD MYELKSAGID RVAGLEAEVL
QLRPRDAHRY GQRLWLERQT GLLLRTDILG PQGELIESAG FSELKWSARS QSQTQAQSQT
LLAEMHRLKG YRIERPKLTH TELEREGWML RTPVAGFRVL HTYAHPPGLP SHGAHAPDAV
RTASGDAAAP NPQGGVLQAV FSDGLTTVSL FIERYDAGRH QREAPAASQG ATQAIGQRHG
DWWITAVGDV PRATLRQFAA QIERRKP
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