Gene Lcho_0597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0597 
Symbol 
ID6160228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp646296 
End bp647342 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content66% 
IMG OID641663347 
ProductGTP-binding protein Era 
Protein accessionYP_001789637 
Protein GI171057288 
COG category[R] General function prediction only 
COG ID[COG1159] GTPase 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00436] GTP-binding protein Era 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00117321 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCACC CCATCGATCC CCAAGACATG CTGCCACCGG ACGCCGACGA ACTCGACGCG 
TCCGACGAAC CGGAAGACAT CGAGGACCCG GACGAGTCCG ACGACACCGA CGAGCCCGAG 
GACGACGGCG ACGAGACCGC TGCGATCGTG CACGAGAACC CGCACTGCGG CCTGATCGCC 
ATCGTCGGTC GGCCCAACGT CGGCAAGTCG ACGCTGCTCA ACACGCTGAT CGGGCAGAAG 
GTCAGCATCA CCTCGCGCAA GGCGCAGACC ACGCGCCACC GCATCACCGG CATCTGCACC 
CACGGCGACA CCCAGTTCGT GTTCGTCGAC ACGCCGGGCT TCCAGACCCG CCACACCAAC 
CGCGGCACCT CGGCGCTCAA CCGCAACCTC AACAAGACGG TGCAGTCGGT GCTGGGTGAC 
GTCGACGTGG TGCTGTTCGT GGTCGAGGCC GGCCGCTTCG GCCCCGACGA TGCCAAGGTG 
CTGGCGCTGC TGCCGCCCGG GCGGCCGACG CTGCTGGTGG CCAACAAGCT CGACATGGTG 
CAGCGCCGCG CCGACCTGAT GCCCTGGCTG CAGCAGATGC AGGCGCGCCA CCCGTTCACC 
GAATTCGTGC CGCTGACGGC GACGAAGGAA GAAGACACCA AGCGCCTGCT CAACATCGTG 
CGCCCCTACC TGCCCGAGCA GCCCTGGTAC TACGACGAAG ACGCGCTGAC CGACCGCAGC 
GACAAGTTCC TGGCCGCCGA GCTGATCCGT GAAAAACTCT TCCGCCTCAC CGGCGACGAG 
CTGCCCTACA CCTCGACGGT GCAGATCGAC AAGTACGAAG AAGAAGGCCG GCTGCGCCGC 
ATCGCCGCGA CCATCATCGT CGAGCGCGAT TCGCACAAGG GCATCGTGAT CGGCGACGGC 
GGCGAGCGCC TCAAGCGCAT CGGCACTGAA GCACGGGTCG AGCTCGAGAA GCTGGGCGAC 
TGCAAGGTCT TCCTGGAGCT GTGGGTCAAG GTGCGCTCCG GCTGGGCCGA CGACGAGAAG 
CGCCTCAAGA GCTACGGCTA CGAATAA
 
Protein sequence
MTHPIDPQDM LPPDADELDA SDEPEDIEDP DESDDTDEPE DDGDETAAIV HENPHCGLIA 
IVGRPNVGKS TLLNTLIGQK VSITSRKAQT TRHRITGICT HGDTQFVFVD TPGFQTRHTN 
RGTSALNRNL NKTVQSVLGD VDVVLFVVEA GRFGPDDAKV LALLPPGRPT LLVANKLDMV 
QRRADLMPWL QQMQARHPFT EFVPLTATKE EDTKRLLNIV RPYLPEQPWY YDEDALTDRS 
DKFLAAELIR EKLFRLTGDE LPYTSTVQID KYEEEGRLRR IAATIIVERD SHKGIVIGDG 
GERLKRIGTE ARVELEKLGD CKVFLELWVK VRSGWADDEK RLKSYGYE