Gene Lcho_0555 details

Gene Information

• Locus tag: Lcho_0555
• ID: 6163358
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 602524
• End bp: 603075
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641663304
• Product: single-strand binding protein
• Protein accession: YP_001789595
• Protein GI: 171057246
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 38
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCTCGG TCAACAAAGT CATTCTCATC GGCAACCTCG GGCGCGACCC GGAGGTGCGC 
TACACCCCCA GCGGCGCGGC CGTCTGCAAC GTCTCGGTCG CCACCACCCG CAACTGGAAG 
AGCAAGGACG GCGGCGAGCG CCAGGAAGAA ACCGAATGGC ACCGCGTGGT CTTCTACGAC 
CGCCTGGCCG AGATCGCCGG CGAATACCTG CGCAAGGGCC GCCCGGTCTA CGTCGAAGGC 
CGCCTGAAGA CCCGCAAGTG GCAGGACAAG GAAGGCCGCG ACCAGTACAC CACCGAAATC 
GTCGCCGACC AGATGCAGTT GCTCGGCGGC CGTGAAAGCG GCGGCGGCGG TGGCGGCGAG 
ATGGGCGCCG AAGAAGAGAT GGGCGGCGGT GGCGGACGCG GCGGCAGCAG CGGCGGCGGC 
TATCGCCGCG AGGCGCCCGA AGGCCGCGCG GCCCCGGCCC CGCGTGCCAG CGCCCCGCGC 
GCACCCGCCC CGGCACCGGC ACCGAAGTCG TCCACCGGCT TCGACGACAT GGACGACGAC 
ATTCCGTTCT GA 

 

Protein sequence

MASVNKVILI GNLGRDPEVR YTPSGAAVCN VSVATTRNWK SKDGGERQEE TEWHRVVFYD 
RLAEIAGEYL RKGRPVYVEG RLKTRKWQDK EGRDQYTTEI VADQMQLLGG RESGGGGGGE 
MGAEEEMGGG GGRGGSSGGG YRREAPEGRA APAPRASAPR APAPAPAPKS STGFDDMDDD 
IPF