Gene Lcho_0542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0542 
SymbolslmA 
ID6161336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp589373 
End bp590017 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content69% 
IMG OID641663291 
Productnucleoid occlusion protein 
Protein accessionYP_001789582 
Protein GI171057233 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC ACGTCTCCGA AGCCACCGTC CCCGAGCCGG ACACCGCCGT GCTGGCCCCC 
GTGCGCAAGC GCCCCAAACC CGGCGAACGC CGCGTCCAGA TCCTGCAGAC GCTCGCGCAC 
ATGCTCGAGC AGCCCGGCGC CGAGCGCATC ACCACCGCCG CGCTGGCCGC GCAGCTCGAG 
GTCAGCGAAG CCGCGCTCTA TCGCCACTTC GCCAGCAAGG CGCAGATGTT CGAGGGCCTG 
ATCGAGTTCA TCGAGACCAG CGTCTTCACC CTGATCAACC AGATCAGCGA GCGCGAGACC 
GATCCGCAGG TCCAGGCCTC GCGCTGCCTG ACCGTGCTGC TGCAGTTCGC CGAGAAGAAC 
CCCGGCATGA CGCGCGTGAT GGTGGGCGAC GCGCTGGTGT TCGAGAACGA CCGCCTGCTG 
TCGCGCATGA ACCAGTTCTT CGAGCGCATC GAGTCGCAGC TGCGCCAGAG CCTGCGTGCG 
CTGGCCGAGC TGCGCGGCTC GGTCACGCCG AGCGTCGACG CCACCGCGCA GGCCTCGGTG 
CTGACCAGCT TTGCGGTCGG GCGGCTGCAG CGTTATGCGC GCTCGGGTTT TCGCCGCAGC 
CCCACCGAAC ACCTCGACGC CGCGCTGCAC CTGCTGCTCG CCTGA
 
Protein sequence
MTEHVSEATV PEPDTAVLAP VRKRPKPGER RVQILQTLAH MLEQPGAERI TTAALAAQLE 
VSEAALYRHF ASKAQMFEGL IEFIETSVFT LINQISERET DPQVQASRCL TVLLQFAEKN 
PGMTRVMVGD ALVFENDRLL SRMNQFFERI ESQLRQSLRA LAELRGSVTP SVDATAQASV 
LTSFAVGRLQ RYARSGFRRS PTEHLDAALH LLLA