| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0541 |
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| Symbol | |
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| ID | 6161335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 588672 |
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| End bp | 589373 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663290 |
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| Product | pyrimidine 5'-nucleotidase |
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| Protein accession | YP_001789581 |
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| Protein GI | 171057232 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCCG GCACCCCGGT CTGGCTGTTC GACCTCGACA ACACGCTGCA CAACGCCTCG
GCGGGGGCGT TCCCGATGAT CAACCGGGCG ATGACCGAGT ACATCGAGCG CGAGCTGGTG
GTCGATCGTG ACGAGGCCTA TCGCCTGCGC GGCCACTACT GGCAGCGTTA CGGCGCGACC
ATGCTCGGGC TGATGCGCCA CCACGGCGTG AAGGCGCCGC ACTTCCTGCA TCACACCCAT
CTGCTGCCGG GGCTGGAGGC CCATCTGCAG GTGCATCCGC ACGACGTGGC GGCGCTGACG
CGCCTGCCCG GCGCCAAGTA CGTGCTGACC AATGCACCGC AGGCCTACGC CGAGCGGGTG
CTGGGTGAGC TGGGGCTGGC GCGGGTCTTC GACGGCGTGA TCGCGATCGA CCAGATGCGC
ATGTTCGGCC ACTGGCGGCC CAAGCCCGAT GCGCGCATGT TCAAGGCGAT CGCGGTACGC
CTGGGCGTGG CGCCCGGGCG CTGCGTGCTG GTCGAGGACA CGCTCGAACA CCAGAAGGCG
GCGCGCCGCA TCGGCATGCG CACGGTGTGG ATGCAGCGCT GGGTCCGGCG CCATGCGCAC
GGTCCCGAAG TGGGTGTTCG CCTCATGCGC AAGCCCGCTT ATGTGTGTGA CAGAATCCGC
AGCCTGCTGG CTCTACAGCG TCTTTGCCGA CCCCCATTGT GA
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| Protein sequence | MKSGTPVWLF DLDNTLHNAS AGAFPMINRA MTEYIERELV VDRDEAYRLR GHYWQRYGAT
MLGLMRHHGV KAPHFLHHTH LLPGLEAHLQ VHPHDVAALT RLPGAKYVLT NAPQAYAERV
LGELGLARVF DGVIAIDQMR MFGHWRPKPD ARMFKAIAVR LGVAPGRCVL VEDTLEHQKA
ARRIGMRTVW MQRWVRRHAH GPEVGVRLMR KPAYVCDRIR SLLALQRLCR PPL
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