| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0524 |
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| Symbol | ddl |
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| ID | 6162865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 570652 |
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| End bp | 571641 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663273 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001789564 |
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| Protein GI | 171057215 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.860729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGCCG TTGACGTCAA GGCGCTCGGC CGCGTCGCCG TCCTGATGGG CGGCAGCTCG
GCCGAGCGCG AGATCTCGCT GATGAGCGGC GCGGGCGTGC TGCAGGCGCT GTTGAGCCAG
GGCGTCGACG CGCATGCCTT CGACCCGGCC GAGCGCGAGC TGGCCGAGCT CAAGCACGAA
GGCTACGCGC GCTGCTTCAT CGCGCTGCAT GGCCGCCACG GCGAAGACGG CACCGTGCAG
GGCGCGCTCG AACTGCTCGG CATCCCGTAC ACCGGCTCGG GCGTGATGGC CTCGGCGATC
GCGATGGACA AGGTCATGAC CAAGCGCATC TGGCTCGCCG AAGGCCTGCC GACGCCGCGT
TACGTCTGGC TCGCCAGCGA CGACCAGGGC GCCGAGCGCG TCGGCCGTGT CAGCGCCGAG
CTGGGCCTGC CGCTGATCGT CAAGCCGCCG CGCGAGGGCT CGTCGATCGG CGTGACCAAG
GTCGTCGAGG CGGCGCAGGT GGGCGCTGCG GTCGCGCTGT CGGCCGGCTA CGACGCCGAC
GTGCTGTGCG AAGCCTTCAT CGAGGGCGAG GAGCTGACCT GCCCGGTGCT GGGCGAAGGC
GCCCATGCCG TGGCGCTGCC GGTGATCCGC ATCGTGCCGC CGGCGGCGGG TTACGACTAC
CAGAACAAGT ACTTCACCGA CGAGGTGCAG TACCTCTGCC CGAGCGGGCT GTCGGCCGAG
CTGGAGCGCG AGATCCAGCG CATCACGCTG GCGTCGTATC GCGCGCTCGG CTGCCGCGGC
TGGGGTCGTG CCGACCTGAT GCTGCGTGCG GGCGATCAGC AGCCCTTCCT GCTGGAGATG
AACACCTCGC CGGGCATGAC CGGCCACTCG CTGGTGCCGA TGTCCGCGCG TGCGTCGGGC
ATCTCGTACG AGGCGCTGTG CCTGCAGCTG CTGGCCGCCG CCCGGCTCGA CAATCCGGCG
CCGGCGCCGC TGTCATCGGC CGGCGGCTGA
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| Protein sequence | MSAVDVKALG RVAVLMGGSS AEREISLMSG AGVLQALLSQ GVDAHAFDPA ERELAELKHE
GYARCFIALH GRHGEDGTVQ GALELLGIPY TGSGVMASAI AMDKVMTKRI WLAEGLPTPR
YVWLASDDQG AERVGRVSAE LGLPLIVKPP REGSSIGVTK VVEAAQVGAA VALSAGYDAD
VLCEAFIEGE ELTCPVLGEG AHAVALPVIR IVPPAAGYDY QNKYFTDEVQ YLCPSGLSAE
LEREIQRITL ASYRALGCRG WGRADLMLRA GDQQPFLLEM NTSPGMTGHS LVPMSARASG
ISYEALCLQL LAAARLDNPA PAPLSSAGG
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