Gene Lcho_0502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0502 
Symbol 
ID6162129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp544849 
End bp545355 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content71% 
IMG OID641663251 
Productrod shape-determining protein MreD 
Protein accessionYP_001789542 
Protein GI171057193 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2891] Cell shape-determining protein 
TIGRFAM ID[TIGR03426] rod shape-determining protein MreD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00917547 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCGACC AGCTGCTGCT GCCCGTCAAC CCGTGGTTCA TGTGGGCCTC GCTGCTGCTG 
GCGCTGGGTC TGAACATGCT GCCGCTCGGC CGCCTGCCGG CGATGCCCGA CCTGGTCGCG 
CTGGCGCTGG TGTTCTGGAA CGTGCACCAG CCGCGCCGGG TCGGTGTCGG CGCGGCCTTC 
TGCTTCGGCC TGCTGATGGA CGTGCACGAA GGCGCCGTGC TCGGCCAGCA TGCGCTGGCC 
TACACGCTGC TGAGCTACTT CGCGATCACC ATCCACCGCC GGCTGCTGTG GTTCTCGACC 
CCGGCGCAGG CACTGCACGT GCTGCCCCTG ATGGCCGCCG CGCACCTCGT GACCCTGCTG 
CTGCGGCTGG CCACCGGCGG GCATTTCCCG GGCTGGAGCC TGCTGCTGTC GCCGCTGTTC 
GAGACCCTGC TGTGGCCGCT GGTGAGCCTG CTGCTGCTGG CGCCGCAGCG CCGCGCGCCC 
GACCCGGACA AGCACCGGCC CCTATGA
 
Protein sequence
MGDQLLLPVN PWFMWASLLL ALGLNMLPLG RLPAMPDLVA LALVFWNVHQ PRRVGVGAAF 
CFGLLMDVHE GAVLGQHALA YTLLSYFAIT IHRRLLWFST PAQALHVLPL MAAAHLVTLL 
LRLATGGHFP GWSLLLSPLF ETLLWPLVSL LLLAPQRRAP DPDKHRPL