Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0492 |
Symbol | |
ID | 6160358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 533233 |
End bp | 534894 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641663241 |
Product | peptidase M48 Ste24p |
Protein accession | YP_001789532 |
Protein GI | 171057183 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0157273 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTCC CGCTGACCCG ACTTTCACCC CCCCGGCGCC TGCGCCGCGC CGGCTGGTGC CTGGCCGCCG CGCTGCTGTG CCCGGCGCCG ATCGCGGTGC TGGCGCAGGG CGCGTCGTCG ACGCTGCCCG CGCTCGGCGA CGCCGCCAGC GACGAGATCG CGGTGGCCGC CGAAGGCCGC CTCGGCGACC GCATCATGCA GGAGCTGCGG CGCGACCCGG ACGTGCTCGA CGACCCGCTG CTGGTCGAGT ACATCGAGCG CATCTGGCAG CCGCTGCTGG CCGCGGCCAA GGCGCGCGGC GATGTCTCCG AAGAACTGGC GCAGAACCTG GCCTGGCAGA CCTTCGTGGT GCGCGACCGC AGTGTCAACG CCTTCGCGCT GCCGGGCGGT TATGTCGGCG TGCACCTGGG CCTGCTGTCG ATGACCGGCA GCCGCGACGA GCTGGCCTCG GTGCTGGCGC ACGAGATGTC GCACGTCAGC CAGCGCCACA TCGCCCGCAT GATGACCAGC GGTCGGCGCA GCTCGATGCT GGCGCTGGCC ACGATGATCC TGGGCATCAT GGCCGTCTCG CGCAGCCCCG ACGCCGCCCA GGCGCTGGTG ATGGGCGGCC AGGCGGCGGC GGTGCAGGGG CAGCTGAACT TCTCGCGCGA CATGGAGCGC GAGGCCGACC GGGTCGGCTT CGGCGTGCTG CAGGGCGCCG GCTACGAAGG GGTCGGCATG GTCGGCATGT TCGAGCGCAT GCAGCTGGCC GCTCGGCTGA CCGACAGCAA CCAGTTCCCC TATCTGCGCT CGCACCCGCT GACCAGCGAC CGCATCGCCG AGGCGCGCAG CCGACTCGGC TTGGACGGCG CGCAGACGCC CAGCGCCAGC CTGGGCTCGG GCGGCGCCTC CGCGGCCTGG CTGCATGCCG CGATGCAGGG CCGCGCACGC GCGCTGATGG ATGGCCGCAA CGAGGCCTTG CAACGGCTGG CGAGCGCCCC CGGCGACGCC TCGGCCGGAC AGGGATCGGC CGGCAACGGC ACGCTCGGCG GGCCGCCTGC GCTGGCCAGC GCCTACGCTG CTGCGCTGGC AGCGTCGCGC CTCAAGCAGT GGCCGCTCGC CGACGCCGCA CTGCAGCGCG CACGCGATCT GGCTGCGCCG CACGAGGCGG CCGCGCGGGC GGTGGCGATG CTGCGCATCG AATCGCTGAT CGAGCGCGAT CGGGCGGTCG AGGCGCTGAA CATCCTGCAG GCGCCGGGCG GCGCGCGGGT CGACGACGGT TCGCGCGCCG GCCTGATGCT GGTCGCCCGC GTGGCGCTGG CTGCGCACCG TTCGCCGGGC GGACCGCAGG CCGCGCTGCA GCGCAGCAGC GAGGCGCTGA TGACCTGGGT CACCGATCAC CCGAACGACG CCAGCGCCTG GGATCTGCTC GCGCAATTGC ACGAGCGCCG CGGCCAGCCG CTGGCGGCGC TGCGTGCGCA GGCCGAGGTG CGGGTCGCGC TGGGCGACTG GCAGGGCGCG GCCGACCGCC TGCGCGCCGG CCAGCGGCTG GCACGCGGGC AGGGCCAGGT CGATCACGTC GAGGCGGCGG TGCTCGACGT GCGGCTCAAG GTGGTGGAGC AGAAGCGGCG CCAGCAGGCC CTCGACGAAG GCCGCGCGCC GGGCGACGAG AGCGGGCGCT GA
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Protein sequence | MTLPLTRLSP PRRLRRAGWC LAAALLCPAP IAVLAQGASS TLPALGDAAS DEIAVAAEGR LGDRIMQELR RDPDVLDDPL LVEYIERIWQ PLLAAAKARG DVSEELAQNL AWQTFVVRDR SVNAFALPGG YVGVHLGLLS MTGSRDELAS VLAHEMSHVS QRHIARMMTS GRRSSMLALA TMILGIMAVS RSPDAAQALV MGGQAAAVQG QLNFSRDMER EADRVGFGVL QGAGYEGVGM VGMFERMQLA ARLTDSNQFP YLRSHPLTSD RIAEARSRLG LDGAQTPSAS LGSGGASAAW LHAAMQGRAR ALMDGRNEAL QRLASAPGDA SAGQGSAGNG TLGGPPALAS AYAAALAASR LKQWPLADAA LQRARDLAAP HEAAARAVAM LRIESLIERD RAVEALNILQ APGGARVDDG SRAGLMLVAR VALAAHRSPG GPQAALQRSS EALMTWVTDH PNDASAWDLL AQLHERRGQP LAALRAQAEV RVALGDWQGA ADRLRAGQRL ARGQGQVDHV EAAVLDVRLK VVEQKRRQQA LDEGRAPGDE SGR
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