Gene Lcho_0492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0492 
Symbol 
ID6160358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp533233 
End bp534894 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content75% 
IMG OID641663241 
Productpeptidase M48 Ste24p 
Protein accessionYP_001789532 
Protein GI171057183 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0157273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTCC CGCTGACCCG ACTTTCACCC CCCCGGCGCC TGCGCCGCGC CGGCTGGTGC 
CTGGCCGCCG CGCTGCTGTG CCCGGCGCCG ATCGCGGTGC TGGCGCAGGG CGCGTCGTCG
ACGCTGCCCG CGCTCGGCGA CGCCGCCAGC GACGAGATCG CGGTGGCCGC CGAAGGCCGC
CTCGGCGACC GCATCATGCA GGAGCTGCGG CGCGACCCGG ACGTGCTCGA CGACCCGCTG
CTGGTCGAGT ACATCGAGCG CATCTGGCAG CCGCTGCTGG CCGCGGCCAA GGCGCGCGGC
GATGTCTCCG AAGAACTGGC GCAGAACCTG GCCTGGCAGA CCTTCGTGGT GCGCGACCGC
AGTGTCAACG CCTTCGCGCT GCCGGGCGGT TATGTCGGCG TGCACCTGGG CCTGCTGTCG
ATGACCGGCA GCCGCGACGA GCTGGCCTCG GTGCTGGCGC ACGAGATGTC GCACGTCAGC
CAGCGCCACA TCGCCCGCAT GATGACCAGC GGTCGGCGCA GCTCGATGCT GGCGCTGGCC
ACGATGATCC TGGGCATCAT GGCCGTCTCG CGCAGCCCCG ACGCCGCCCA GGCGCTGGTG
ATGGGCGGCC AGGCGGCGGC GGTGCAGGGG CAGCTGAACT TCTCGCGCGA CATGGAGCGC
GAGGCCGACC GGGTCGGCTT CGGCGTGCTG CAGGGCGCCG GCTACGAAGG GGTCGGCATG
GTCGGCATGT TCGAGCGCAT GCAGCTGGCC GCTCGGCTGA CCGACAGCAA CCAGTTCCCC
TATCTGCGCT CGCACCCGCT GACCAGCGAC CGCATCGCCG AGGCGCGCAG CCGACTCGGC
TTGGACGGCG CGCAGACGCC CAGCGCCAGC CTGGGCTCGG GCGGCGCCTC CGCGGCCTGG
CTGCATGCCG CGATGCAGGG CCGCGCACGC GCGCTGATGG ATGGCCGCAA CGAGGCCTTG
CAACGGCTGG CGAGCGCCCC CGGCGACGCC TCGGCCGGAC AGGGATCGGC CGGCAACGGC
ACGCTCGGCG GGCCGCCTGC GCTGGCCAGC GCCTACGCTG CTGCGCTGGC AGCGTCGCGC
CTCAAGCAGT GGCCGCTCGC CGACGCCGCA CTGCAGCGCG CACGCGATCT GGCTGCGCCG
CACGAGGCGG CCGCGCGGGC GGTGGCGATG CTGCGCATCG AATCGCTGAT CGAGCGCGAT
CGGGCGGTCG AGGCGCTGAA CATCCTGCAG GCGCCGGGCG GCGCGCGGGT CGACGACGGT
TCGCGCGCCG GCCTGATGCT GGTCGCCCGC GTGGCGCTGG CTGCGCACCG TTCGCCGGGC
GGACCGCAGG CCGCGCTGCA GCGCAGCAGC GAGGCGCTGA TGACCTGGGT CACCGATCAC
CCGAACGACG CCAGCGCCTG GGATCTGCTC GCGCAATTGC ACGAGCGCCG CGGCCAGCCG
CTGGCGGCGC TGCGTGCGCA GGCCGAGGTG CGGGTCGCGC TGGGCGACTG GCAGGGCGCG
GCCGACCGCC TGCGCGCCGG CCAGCGGCTG GCACGCGGGC AGGGCCAGGT CGATCACGTC
GAGGCGGCGG TGCTCGACGT GCGGCTCAAG GTGGTGGAGC AGAAGCGGCG CCAGCAGGCC
CTCGACGAAG GCCGCGCGCC GGGCGACGAG AGCGGGCGCT GA
 
Protein sequence
MTLPLTRLSP PRRLRRAGWC LAAALLCPAP IAVLAQGASS TLPALGDAAS DEIAVAAEGR 
LGDRIMQELR RDPDVLDDPL LVEYIERIWQ PLLAAAKARG DVSEELAQNL AWQTFVVRDR
SVNAFALPGG YVGVHLGLLS MTGSRDELAS VLAHEMSHVS QRHIARMMTS GRRSSMLALA
TMILGIMAVS RSPDAAQALV MGGQAAAVQG QLNFSRDMER EADRVGFGVL QGAGYEGVGM
VGMFERMQLA ARLTDSNQFP YLRSHPLTSD RIAEARSRLG LDGAQTPSAS LGSGGASAAW
LHAAMQGRAR ALMDGRNEAL QRLASAPGDA SAGQGSAGNG TLGGPPALAS AYAAALAASR
LKQWPLADAA LQRARDLAAP HEAAARAVAM LRIESLIERD RAVEALNILQ APGGARVDDG
SRAGLMLVAR VALAAHRSPG GPQAALQRSS EALMTWVTDH PNDASAWDLL AQLHERRGQP
LAALRAQAEV RVALGDWQGA ADRLRAGQRL ARGQGQVDHV EAAVLDVRLK VVEQKRRQQA
LDEGRAPGDE SGR