Gene Lcho_0487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0487 
Symbol 
ID6162093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp526855 
End bp528555 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content67% 
IMG OID641663236 
ProductTPR repeat-containing protein 
Protein accessionYP_001789527 
Protein GI171057178 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.679539 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGCGACT GGCTGCTGCA AGCAGGTCGT CATGACGAGG CCGAATCGGC CTACCGCAAG 
GCCCTGCAGA TCAAACCCTT GCATGCACGC GCACAAGAGG GGCTCGGGCT GGTGCTTCTG
CGTATCGGTC GTCTCGAAGA AGCCTTCCTG CACCTCGAAG CTGCCCACAA GGTCGAGCCG
GACAACGCCG AGATCCTGAC GCACTGGGGC CTGGTTGATC TGGAAATGGG CAACCTCGGC
AACGCCGCCG GCAAGTTCCA CCGCGCCATC GAGCGCGATC CACGCAACCC GCACGCATGG
CACAACCTGG GCCTGGTGGC CCTGAAACAA GGCCAGGTCG ACACCAGCAT CGAGCTGCTG
CGCAAGGCAA TCGAGATTCG CCCGCAGCAT GGCTTGGCAT ACAGCAACCT GGCGATGGCG
CTGCGCCGCG CTGAACGCCT CGATGACGCC CTGGACGCGG CCCGCAAGGC CACCGAGTAC
AAGGCAGACA ACGCGCGGGT CTGGGTGGTG CTCGCAGATG TGCAGATGAA TCTGGGCGAC
TTCGATGCCG CCGGCCAGTC GCTCGAACGC GCGACGGCCA TCGATCCCCA GCACGTGGGC
ACATTTGTCG GCTTGGGCAA ACGGCACGCC GCCACCGGCG ACCCCACGCG CAGCCGCGAG
GCCTACACCC GGGCACTGCA ACTCAACCCC GACAGCGCCG ACGCCCGAGG GGGGCTCGGC
GAACTGGAGC TCCTGCTGGG CCAGTGGTCG ACCGCCTGGG ATCTCTACGA AGCACGCCGC
CGGGTCGAGG GCACGCCGGT GCGGCCCTAT CCGTTCAAGC CATGGCAAGG CGAAGACCTG
CAGCAACGCC ACATCCTTGT CCACGCCGAG CAGGGCCTGG GCGACATCAT CCTGTTCGCC
TCCTGCCTGC CCCAACTGCA AGCACTGGGT GGACAGTGCA CGATCGAGGT CCGCTCGCGC
ATGCAGGCCC TGTTCGCACG CTCGTTCCCG CAGGCGCGGG TGATCGGCCG CGCAGCCAAC
GCCGAGTTGC TCGACTGGCC AGCAGAGCTA CCTGCGTTCG ATTACGAGAT CCCGTTCGGC
TCGCTGCCGC GCTGGTTCCG CGCCAGGGCC ACCGACTTTC CCGCCCACCA GGGCTATCTG
GTGGCTGACG CCGCGCGCGT GCAGACCTGG CGCGACAAGC TCGCCCCCGG AGGCAGGCCC
ACAGTCGGCA TCGCGTGGCG CGGCGGCATG GCCGCCACAT CCAAGCTGCA ACGTTCGCTC
GAACTCAAGG CACTGGTGAG CGCCCTCGCG CCGACCGGTG TCCAACTGGT GTGCCTGCAG
TACGGGAACG TCGACGCCGA ACTGGAGCAA GTGCGATCCG AGTTGGGTGT GCACATCGAC
CCGGGGGTCT CGGGCTTCGG CGATCTCGAC GACCTGGCAG CATTGACGCA GGCCTGCGAT
CGGATCGTGA CGGTGTGCTC GACCCAAGCA CACCTGACCG GCGCCCTTGG CAAGCCCGGT
CTGGTGCTGG TACCCAGCAA TCCCAGTTGG CGCTATCTGC ATACGGGCAC GTCGATGCCC
TGGTATCCAA GCCTGCAACT CGTCCGGCAG CAGCAGCCCG GCGATTGGAG CGCCGTGCTC
ACTCAAGCGC AGTCGTGGGT GACATCGCAG ACAGCAGCCA GCCATTCGAT AGCAGACGCC
CCGTCTGGCG ACGCGCTGTG A
 
Protein sequence
MGDWLLQAGR HDEAESAYRK ALQIKPLHAR AQEGLGLVLL RIGRLEEAFL HLEAAHKVEP 
DNAEILTHWG LVDLEMGNLG NAAGKFHRAI ERDPRNPHAW HNLGLVALKQ GQVDTSIELL
RKAIEIRPQH GLAYSNLAMA LRRAERLDDA LDAARKATEY KADNARVWVV LADVQMNLGD
FDAAGQSLER ATAIDPQHVG TFVGLGKRHA ATGDPTRSRE AYTRALQLNP DSADARGGLG
ELELLLGQWS TAWDLYEARR RVEGTPVRPY PFKPWQGEDL QQRHILVHAE QGLGDIILFA
SCLPQLQALG GQCTIEVRSR MQALFARSFP QARVIGRAAN AELLDWPAEL PAFDYEIPFG
SLPRWFRARA TDFPAHQGYL VADAARVQTW RDKLAPGGRP TVGIAWRGGM AATSKLQRSL
ELKALVSALA PTGVQLVCLQ YGNVDAELEQ VRSELGVHID PGVSGFGDLD DLAALTQACD
RIVTVCSTQA HLTGALGKPG LVLVPSNPSW RYLHTGTSMP WYPSLQLVRQ QQPGDWSAVL
TQAQSWVTSQ TAASHSIADA PSGDAL