| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0485 |
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| Symbol | |
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| ID | 6162091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 524537 |
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| End bp | 524947 |
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| Gene Length | 411 bp |
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| Protein Length | 136 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641663234 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_001789525 |
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| Protein GI | 171057176 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAGCA TCCAACGAGG TTTCACCCTC ATCGAACTGA TGATCGTCGT CGCGATCATC
GGCATCCTGG CCGCAGTTGC GCTGCCCGCT TACCGTGACT ACACCTTGCG CGCCAAGGTT
TCGGAGTTGC TGCTCGCAGC CAGCTCGACC CGTACTGCCG TCACTGAAAA TTCGCAGAAC
GCCGGTGCGA TCAATGTCTC GGGCATCACG GCCCCGGGTG CCGCCGGCAA GGTCGCTTCA
GCTTCGGTGG CAGCCACGGG CATCGTCATC GTCGGCGCCA CAGCCGAATT CGGTGGCACG
GCCGTCACCG TGACGCTGGT ACCGAGCTGG AACGCCTCGG CCAACACCGT TGTCTGGTCC
TGCACGGTCA ACCCGGAAAA CCTCTCGCCG TCGTCCTGCC GCCAAGACTG A
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| Protein sequence | MKSIQRGFTL IELMIVVAII GILAAVALPA YRDYTLRAKV SELLLAASST RTAVTENSQN
AGAINVSGIT APGAAGKVAS ASVAATGIVI VGATAEFGGT AVTVTLVPSW NASANTVVWS
CTVNPENLSP SSCRQD
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