Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0485 |
Symbol | |
ID | 6162091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 524537 |
End bp | 524947 |
Gene Length | 411 bp |
Protein Length | 136 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641663234 |
Product | fimbrial protein pilin |
Protein accession | YP_001789525 |
Protein GI | 171057176 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGCA TCCAACGAGG TTTCACCCTC ATCGAACTGA TGATCGTCGT CGCGATCATC GGCATCCTGG CCGCAGTTGC GCTGCCCGCT TACCGTGACT ACACCTTGCG CGCCAAGGTT TCGGAGTTGC TGCTCGCAGC CAGCTCGACC CGTACTGCCG TCACTGAAAA TTCGCAGAAC GCCGGTGCGA TCAATGTCTC GGGCATCACG GCCCCGGGTG CCGCCGGCAA GGTCGCTTCA GCTTCGGTGG CAGCCACGGG CATCGTCATC GTCGGCGCCA CAGCCGAATT CGGTGGCACG GCCGTCACCG TGACGCTGGT ACCGAGCTGG AACGCCTCGG CCAACACCGT TGTCTGGTCC TGCACGGTCA ACCCGGAAAA CCTCTCGCCG TCGTCCTGCC GCCAAGACTG A
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Protein sequence | MKSIQRGFTL IELMIVVAII GILAAVALPA YRDYTLRAKV SELLLAASST RTAVTENSQN AGAINVSGIT APGAAGKVAS ASVAATGIVI VGATAEFGGT AVTVTLVPSW NASANTVVWS CTVNPENLSP SSCRQD
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