Gene Lcho_0477 details

Gene Information

• Locus tag: Lcho_0477
• ID: 6162095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 514543
• End bp: 515244
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641663226
• Product: MotA/TolQ/ExbB proton channel
• Protein accession: YP_001789517
• Protein GI: 171057168
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0811] Biopolymer transport proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 58
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGGGC TGCAACAGAT CTGGTCCGAA GGCGATGCGG TCAGCCGCGG GGTCGCGCTG 
CTGCTGCTGG CGATGTCGGT GAGTGCCTGG GTGCTGATCT TCTGGAAGAG CTGGGTGCTG 
GGCCGCGCAC GCCGCGATCT GGCCGTGGTC GTGCCGGCCT TCTGGCGTGC GCCCGACCTC 
GACGCCGGTC AGCGCCTGCT CGCCAGCCGT GACCGCGAAC AGCTGCTGCT GCCGCTGCTC 
GACGCCGCGC TGCGCCCGGT CTCGGCCGAC ACGCTCGAAG CCGGCACGCA CACCCAGGCG 
CAGCTGACGC GCCGCCTGCG CGACGCGCTG CACGGCGTGC TGGCACAGCT GCAGCAGGGC 
CAGGTGCTGC TCGCGTCGGT CGGTGCCACG GCGCCGTTCA TCGGCCTGTT CGGCACGGTC 
TGGGGCATCT ACCACGCGCT GCTGGGCATC TCGGCGGCGG GCAGCGTCAG CATCGACAAG 
GTCGCCGGCC CGGTCGGCGA GGCGCTCATC ATGACCGCCG CCGGCCTGGC GGTGGCGATC 
CCCGCCGTGC TGGCCTACAA CCTGTTCGGC AAATGGGTCG GCGCCTGCGA GGCCGATCTC 
GAAGGCTACG CCCATGACCT GCGCGAGATG CTGGTCGAGC AGGCCGGCCT GACCCCGCGC 
CATCCGCCGG CCGGCGAGGA ATCATGGCCT TCGGCCGGCT AG 

 

Protein sequence

MNGLQQIWSE GDAVSRGVAL LLLAMSVSAW VLIFWKSWVL GRARRDLAVV VPAFWRAPDL 
DAGQRLLASR DREQLLLPLL DAALRPVSAD TLEAGTHTQA QLTRRLRDAL HGVLAQLQQG 
QVLLASVGAT APFIGLFGTV WGIYHALLGI SAAGSVSIDK VAGPVGEALI MTAAGLAVAI 
PAVLAYNLFG KWVGACEADL EGYAHDLREM LVEQAGLTPR HPPAGEESWP SAG