Gene Lcho_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0420 
Symbol 
ID6163657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp462037 
End bp462513 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content63% 
IMG OID641663169 
Productsignal-transduction protein 
Protein accessionYP_001789460 
Protein GI171057111 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTTTC CATTCCAACT GTCCGACGAG CCCATCATGA CCAGCGTAGC CGACATCCTC 
AAGAGCAAAC CCCAGGCCGT GGTGCACACC ACCACGCCGT CGACCACCGT GTTCGATGCC
GTCAAGCTGA TGGCAGAAAA AGGCATCGGC GCCCTGCTGG TGACCGAAGG CGAGCAGCTG
GTCGGCATCG TCACCGAGCG CGACTACGCG CGCAAGGTGG CGCTGATGTC GCGATCGTCG
AGAGAGACGC CGGTGCGCGA CATCATGACC GCCGACGTGA TGTTCGTGCG GCCCGACCAG
ACCAGCTCCG AATGCATGGC GCTGATGACC GAAAACCGCC TGCGCCACCT GCCCGTGATG
GCCGACGGCA AGCTGCTCGG CCTGATCTCG ATCGGCGACC TGGTCAAGGA CATCATCTCG
GAGCAGCGCT TCATCATCGA GCAGCTCGAG CACTACATCA CCGGCGAACG CGCCTGA
 
Protein sequence
MIFPFQLSDE PIMTSVADIL KSKPQAVVHT TTPSTTVFDA VKLMAEKGIG ALLVTEGEQL 
VGIVTERDYA RKVALMSRSS RETPVRDIMT ADVMFVRPDQ TSSECMALMT ENRLRHLPVM
ADGKLLGLIS IGDLVKDIIS EQRFIIEQLE HYITGERA