| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0418 |
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| Symbol | |
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| ID | 6163655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 459189 |
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| End bp | 461096 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663167 |
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| Product | xylose isomerase domain-containing protein |
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| Protein accession | YP_001789458 |
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| Protein GI | 171057109 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGTT CGATCGCCAC CGTTTCGCTC TCCGGCATGT TGAAGGAGAA GCTGCAGGCC
GCGGCCGCGG CGCATTTCGA CGGGGTCGAG ATCTTCGAGA ACGACCTGCT GCAGTTTTCG
GGCACGCCAC GTGACGTGCG CCGGATCTGC GAGGACCTGG GTCTGGCGAT CGACATGTTC
CAGCCCTTCC GCGATTTCGA TGCGCCCACC CCGGCGCAAC TGGCGCGCAG CCTCGAGCGC
GCCGAGCGCA AGTTCGACGT CATGGCCGAG CTGGGCACGC CGCTGATCCT GGTCTGCTCG
AACGTGCAGC CCGATGCGAT CGGCGATGTC GATCAGCTCG CCGAGCAGTT CCATCAGCTC
GCCGAGCGCG CCGCCAAACG CGGCATGCGC ATCGCCTACG AGGCGCTGGC CTGGGGCAGC
CAGGTCAAGC TGTTCTCGCA GGCCTGGGCG GTGGTCGAGC GCGTGAACCA CCCGAACCTG
GGCCTGGCGC TCGACAGCTT CCACACCCTG TCGCTGCGCG ACGACCCGGC GCCGATCGCG
AAGTTGCCGG GCGACAAGAT CTTCTACATG CAGCTCGCCG ACGCGCCCTG GCTCGCCTGG
GGCCCGAGCG ACGTGCTGAC CTACAGCCGC CATTACCGCT GCTTCCCGGG CCAGGGCGAG
CTCGACGTCA CCGGCTTCGT GCGCGCCGCG CTCGACGCCG GCTACACCGG GCCGATCTCG
CTGGAGATCT TCAACGACGA GTTCCGCTCG GCGCCGGCCC GCGCCAACGC GGTCGACGCG
ATGCGCTCGC TGCTGTGGCT GGAAGAACAA GTGCGCCACA CGCCGCCCGC ACCGCAGGCC
AGGCCCGTCA CGGTGCCGCT GTTCGACCCG CCGCCCGCGC CGGTGCTGAC CGGCTGGTCG
TTCATCGAGT TCGCGGTCGA TCCGGCCACC GCCACGCGGC TGGCCGGGCA GCTCACGAGC
CTGGGATTTG CGCGCATCGG CCGGCACCGA TCGAAGGACG TCGACCTGTA CGGCCAGGGC
GACGTGCGCA TCGTGCTCAA CCTCGAACAG GATTCGTTCG CCCGCAGCCA CTTCGACGTG
CACGGCACCT CGGTCTGCGC GCTGGCACTG GCCACCGTCG ACGCCCAGGC CGCATTGGTG
CGGGCCGAGG CGCTGGCCTG CCCGCGTGTC ACCGGCCGCA TCGGCAGCGA CGAGCTGAGC
ATCCCGGCGG TGCGCTCGCC CGACGGCAGC CTGCTGTATT TCTGCGATGC CAAGCAAGGC
GGCCACTCGT TCGAGGCCGA CTTCATCATC GACGCCGAAG CCCTGCGCAA CACGCCGGCC
GGCGTCGGTG CCCGCGTCGA TCACCTGACC CAAGCGCTGC CGGGCGGCCA GGTCGAGCCG
TGGGTGCTGT TCTACCGCGC GGTGCTGGGC CTGGCGCCGC AGCGCAACAC GGTGCTGCAC
GACCCCTACG GCATCATGCG CAGCCGCGAG ATCGAGTCGG CCGACGGTGC GGTGCGCTGC
TCGCTGATGG TCTCGGAGCG CGACAACACG GCGGTGTCGC GCTCGGTGTC ACGCTTCGGC
GGTGCCGGCG TGCAGCAGAT CGCGATCGGC GTGGGCGACG CGATCGCCAC CGTCACCGCG
CTGCGCCAGC GCGGCGCGCC GCTGCTGCCG GTGCCACACA ACTACTACGA CGACCTGGCC
GCCAAGTACG AGCTCGATCC GGCCTTCCTG GCCGCGCTGC GTGCCGCCGG CGTGATGTAC
GAGCGCGACG CCAAGGGCGA GTTCCTGCAC GCCTACACCG CGCCGTTCGA GGACCGCTTC
GAGTTCGAGT TCGTCGAGCG CCGCGGCGCC TACGACCTCT ACGGCTCGAC CAACGCGCCG
GTGCGCCTGG CCGCGCTGGC CGAGTGGCGC GCGTCGCACG GCCGCTGA
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| Protein sequence | MRRSIATVSL SGMLKEKLQA AAAAHFDGVE IFENDLLQFS GTPRDVRRIC EDLGLAIDMF
QPFRDFDAPT PAQLARSLER AERKFDVMAE LGTPLILVCS NVQPDAIGDV DQLAEQFHQL
AERAAKRGMR IAYEALAWGS QVKLFSQAWA VVERVNHPNL GLALDSFHTL SLRDDPAPIA
KLPGDKIFYM QLADAPWLAW GPSDVLTYSR HYRCFPGQGE LDVTGFVRAA LDAGYTGPIS
LEIFNDEFRS APARANAVDA MRSLLWLEEQ VRHTPPAPQA RPVTVPLFDP PPAPVLTGWS
FIEFAVDPAT ATRLAGQLTS LGFARIGRHR SKDVDLYGQG DVRIVLNLEQ DSFARSHFDV
HGTSVCALAL ATVDAQAALV RAEALACPRV TGRIGSDELS IPAVRSPDGS LLYFCDAKQG
GHSFEADFII DAEALRNTPA GVGARVDHLT QALPGGQVEP WVLFYRAVLG LAPQRNTVLH
DPYGIMRSRE IESADGAVRC SLMVSERDNT AVSRSVSRFG GAGVQQIAIG VGDAIATVTA
LRQRGAPLLP VPHNYYDDLA AKYELDPAFL AALRAAGVMY ERDAKGEFLH AYTAPFEDRF
EFEFVERRGA YDLYGSTNAP VRLAALAEWR ASHGR
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