Gene Lcho_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0417 
Symbol 
ID6163654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp458696 
End bp459145 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content66% 
IMG OID641663166 
Product3-dehydroquinate dehydratase 
Protein accessionYP_001789457 
Protein GI171057108 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0757] 3-dehydroquinate dehydratase II 
TIGRFAM ID[TIGR01088] 3-dehydroquinate dehydratase, type II 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCC TCGTCCTCAA CGGCATCAAC CTCAACATGT TCGGCAAGCG CGATCCCAAG 
CAGTACGGGA CGATCACGCT GGCGCAGATC GACGAGCAGC TCGACGCGCT GGGCGCCGAG 
CTGGGCGCCA CGGTGCAGCA CTTCCAGAGC AACCACGAGG GCGAGATGGC CGAGCGCATC 
CACCAGGCCC ATGTCGACAA CGTCGACGCG GTGCTGATCA ACGCCGGCGC CTGGACCCAC 
TACAGCTACG GCATCCGCGA CGCGCTGGCG ATCCTGAAGT GCCCGATCGT CGAGGTGCAC 
ATGTCCAACA TCCACGCCCG CGAGCCCTTC CGCCACCACT CGGTGATCGC CGAGATCGCC 
CGCGGCCAGA TCGCCGGTTT CGGTGTCGAC AGCTACCTGA TGGGCCTGCG CGCCGCGGTC 
AACCTGGTCA ACGCCGCCAA GGCCGGCTGA
 
Protein sequence
MNILVLNGIN LNMFGKRDPK QYGTITLAQI DEQLDALGAE LGATVQHFQS NHEGEMAERI 
HQAHVDNVDA VLINAGAWTH YSYGIRDALA ILKCPIVEVH MSNIHAREPF RHHSVIAEIA 
RGQIAGFGVD SYLMGLRAAV NLVNAAKAG