Gene Lcho_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0398 
Symbol 
ID6164019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp437561 
End bp438190 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content68% 
IMG OID641663147 
Producthypothetical protein 
Protein accessionYP_001789438 
Protein GI171057089 
COG category[S] Function unknown 
COG ID[COG1284] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.178289 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCC CCGCACCCGC CGCAGCTTCC GCCGCTGTCA CCCGTCACAG CCGTTTCGAA 
GACCTGCAGG CGCTGCTGTC GGGCACCTTG CTGATCGCGC TGGCGGTGCT GATGTACCGC 
CACGCCGGGC TGCTGTCGGG TGGCACGGCG GGGCTGGCCT TCCTCGGCCA CTACGCCAGC 
GGCTGGCGTT TCGGCACCTT GTTCTTCCTG ATCAACCTGC CGTTCTACTG GCTGGCCTGG 
CGGCAGATGG GCCGGGCGTT TTCGGTCAAG ACCTTCCTGG CCGTGCTGCT GCTGTCGGCC 
GAGTCCGAAG TGCTGCCGCA ACTGATCTCG TTCCGGACGC TCGAGCCGCT CTACGCCGCG 
GTGATGGGCG GGCTGCTGAT GGGCACCGGC TTCCTGATCC TGTTCCGCCA CCGCGCCAGC 
CTGGGCGGCG TGGGCATCCT GGCGCTCGCG CTGCAGGAGC GCCGTGGCTG GCGCGCCGGC 
CACGTGCAGA TGGCGGTCGA CGTGATGATC GTCGCGATGG CGCTGTGGCT GGTCGAGCCG 
CAGAAGGTGC TGATGTCGAT CGCCGGCGCG GTGGCTCTGA ACATGATTCT TGCGATCAAC 
CACCGGCCCG GGCGCTACAT CGCCCAATGA
 
Protein sequence
MSTPAPAAAS AAVTRHSRFE DLQALLSGTL LIALAVLMYR HAGLLSGGTA GLAFLGHYAS 
GWRFGTLFFL INLPFYWLAW RQMGRAFSVK TFLAVLLLSA ESEVLPQLIS FRTLEPLYAA 
VMGGLLMGTG FLILFRHRAS LGGVGILALA LQERRGWRAG HVQMAVDVMI VAMALWLVEP 
QKVLMSIAGA VALNMILAIN HRPGRYIAQ