Gene Lcho_0365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0365 
Symbol 
ID6162688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp399871 
End bp400365 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content70% 
IMG OID641663114 
Productphosphoribosylaminoimidazole carboxylase, catalytic subunit 
Protein accessionYP_001789405 
Protein GI171057056 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 
TIGRFAM ID[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00000769841 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAACAGCG CCTCGCCCGT GGTCGGCATC GTCATGGGTT CCAACAGCGA TTGGGACACC 
ATGCAGCATG CCGCGCAGAT TCTCGCCGAC TTCGGCGTGC CCTTCGAGGC GCGTGTCGTC 
TCGGCTCACC GCATGCCCGA CGACATGTTC GCCTACGCCG AAAGCGCGCG TGGGCGCGGC 
CTGCAAGCCA TCATCGCCGG TGCCGGCGGT GCCGCGCACC TGCCCGGCAT GCTGGCCGCC 
AAGACCACCG TGCCGGTGCT CGGCGTGCCG GTGGCGAGCA AGCACCTGCA GGGGGTCGAC 
TCGCTGCATT CGATCGTGCA GATGCCCAAG GGCATCCCGG TCGCGACGTT TGCGATCGGC 
GTCGCCGGCG CCGCCAACGC GGCCTTGTTC GCGGTGGCGC AGCTGGCCAA CCACGACGCC 
GCGCTGCTCG AAAAGCTCGA AGCCTTCCGG GTGCGCCAGA CCGAGGTCGC CCGCGCCATG 
AAGCTGGGGG ACTGA
 
Protein sequence
MNSASPVVGI VMGSNSDWDT MQHAAQILAD FGVPFEARVV SAHRMPDDMF AYAESARGRG 
LQAIIAGAGG AAHLPGMLAA KTTVPVLGVP VASKHLQGVD SLHSIVQMPK GIPVATFAIG 
VAGAANAALF AVAQLANHDA ALLEKLEAFR VRQTEVARAM KLGD