| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0349 |
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| Symbol | |
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| ID | 6160694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 384107 |
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| End bp | 385291 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663098 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001789389 |
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| Protein GI | 171057040 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0885534 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCTGC GTCACCCCCC CATCGTCCGC TCGCAGCCGC TGTCGGCGCT GCTCGGCGGC
CTGCTCGGAC TTGCGTTGTG TTCGGTGGCG CTCGACAGCC AGGCGCAGGC TTTTCCCGAT
TATCCGATTA CCGCGGGCCA GCGCAGCACT GCCCGGCAGG TGGCACAGGC CGGCGTGCCC
TTGTCCGAGC TGGCGCCCGA CGCCCCCGAC AGCTACACCG TCAAGCGCGG CGACACGCTC
TGGGACATCT CGCAGATCTT CCTGCGCAGC CCGTGGCGCT GGCCCGAACT GTGGGGCATG
AACCTCGAAC AGATCCGCAA TCCGCACCTG ATCTATCCGG GCCAGTTGCT GGTGCTGGTC
AAGAGCAACG GACGGGCACG CCTCGAAATG GGGCGCGCGG TCGAGGGCGG CACACAGAAA
TTGTCGCCAC GCGCGCGCGC CGCCGGCATC GATCGCGGCC CGATCGGGCC GATCGCGATG
CACCTGATCC AGCCCTTCCT CAACGATGCC GTGGTGCTCG ACAGCAACGA GCTCGAAAGC
GCCCCACGCA TCGTCGCCGG GCGCGAGGGC CGCGTGCTGC TCGGCCGTGG CGACATCGCC
TACGTGCGCG GCGACCTGCC GCCACGGCGC GACTGGCAGG TCTTCCGCCA GGCCAAACCC
CTGCACGATC CGGCCAGCGG CGAGGTGCTG GGCTACGAAG CGGCCTTCGT CGGCAGCGCC
GAATACATCC AGCCCGGCCG GACCCAGCCC GGCGCCGAAA ACACCACCGA GCTCGTGCCG
GCCACCTTCA ACCTGGTGTC GCTGCGCCAG GAGGCCGGCG TGGGCGACCG CCTGGCCGCC
GCGCCGCCGC GAGACGACAG CCTGTACGTG CCGCACTCGC CCGCCGCACC GCTGGAGGCG
CTGGTCGTGT CGATCTACGG CGACGGCCTG CATGCCGGGC AGAACCAGAT CGTGTCGGTC
AACCGCGGCA AGTCCACCGG CATGGAACCC GGCCACGTGC TGGCGATCTG GCGGACCGGC
TCGCTGGTGC GCGACGCCGA AGATCCGCAG CGCCAGGCGT TGCGCCTGCC CGACGAGCGC
AATGGCAACC TGTTCATCTT CCGCGTCTTC AACCGGGTCT CCTACGGGCT GATCCTGAGC
TCCGAGACCC CCGTCCGCGC AGGCGATCGC ATCACGCAGC CCTGA
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| Protein sequence | MILRHPPIVR SQPLSALLGG LLGLALCSVA LDSQAQAFPD YPITAGQRST ARQVAQAGVP
LSELAPDAPD SYTVKRGDTL WDISQIFLRS PWRWPELWGM NLEQIRNPHL IYPGQLLVLV
KSNGRARLEM GRAVEGGTQK LSPRARAAGI DRGPIGPIAM HLIQPFLNDA VVLDSNELES
APRIVAGREG RVLLGRGDIA YVRGDLPPRR DWQVFRQAKP LHDPASGEVL GYEAAFVGSA
EYIQPGRTQP GAENTTELVP ATFNLVSLRQ EAGVGDRLAA APPRDDSLYV PHSPAAPLEA
LVVSIYGDGL HAGQNQIVSV NRGKSTGMEP GHVLAIWRTG SLVRDAEDPQ RQALRLPDER
NGNLFIFRVF NRVSYGLILS SETPVRAGDR ITQP
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