Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0344 |
Symbol | secD |
ID | 6161145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 376828 |
End bp | 378729 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663093 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001789384 |
Protein GI | 171057035 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.296213 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGTT ATCCCTGGTG GAAGTACCTG ATCCTCGCCA TCGCGGTGCT GGTCGGGTCG CTTTACACCC TGCCCAATTT CTTCGGCGAA GCGCCGGCCG TGCAGGTCTC GAGCGGCAAG GCGACCGTGA AGGTCGATGC CTCGCTGGTG CCGCGCGTGC AGCAGGCGCT CGCCGGTGCC GGCCTGTCGC CCGACTTCGT GCAGCTCGAG GGCCTGTCCG TGCGCGCCCG CTTCGGCGAC ACCGACACCC AGCTCAAGGC GCGGGATGCG GTCGTCAAGG CGCTCAATCC GGATCCGTCC GACCCGAGCT ACATCGTCGC GCTGAACCTG ATCTCGCGTT CGCCGCAGTG GCTGACGGCG ATGCGCGCGC TGCCGATGTA CCTGGGCCTG GACCTGCGCG GCGGCGTGCA CTTCCTGATG CAGGTCGACA TGAAGGCGGC GCTGACCAAG AAGGCCGAGT CGCTGACCGG CGACCTGCGC GCGCTGCTGC GCGACAAGTC GATCCGCCAT GCCGGCATCG TGCGCAACGG CGATGGCGTC GAGGTGCGCC TGCGCGACGC GCCAACCCAG GCCCGCGCGC TGGCGCTGCT GCGCGAGCAG CAGCCCGACC TGCTGTGGGT CGAGTCCACC GACGGCACCG AATTCAAGCT CGCCGGCACG CTCAAGCCCG AGGCCGCGCG CAAGGTCCAG GAACAGGCCG TCACGCAGAA CATCAACACC CTGCACAACC GCATCAACGA GCTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTC GACCGCGTGG TGGTGCAGCT GCCGGGCGTG CAGGACGTCG CCAAGGCCAA GGACATCATC GGCCGCACGG CCACGCTCGA GGTGCGCCTG GTCGACGACA GCACCGAGGC GCAGGCGGCG CTGTCGGGCG GTGGCCCGGT GCCGTTCGGC ACCGAGCGCT ACACCGAACG CGGTGCGCGC GCGATCATCG TCAAGCGTCA GGTCATCCTG ACCGGCGAGA ACCTGACCGA CGCGCAGGCC GGCTTCGACG AGAACCAGCA GCCCGCCGTG CACCTCACGC TCGATGCCCG CGGCGCGCGC ATCTTCCGCG ACGTCACGCG CGAGAACATC AACAAGCGCA TGGCCATTCT CCTGTTCGAG AAGGGCAAGG GCGAGGTCGT CACCGCGCCG GTGATCCGCA GTGAAATCGG CGGCGGGCGG GTGCAGATCT CGGGTTCGAT GTCGCCGGTC GAGTCGGCCG ACACCGCGCT GCTGCTGCGC GCGGGCTCGC TGGCCGCGCC GATGGAGATC ATCGAGGAGC GCCTGATCGG CCCCAGCCTG GGCGCCGAGA ACATCGCCAA GGGCTTCGAC AGCGTGCTGT ACGGCTTTGT CGCGATCGCG ATCTTCATGT GCTGCTACTA CCTGCTGTTC GGCGTCTTCT CGACCCTGTC GCTGGGCGTG AACCTGCTGC TGCTGGTGGC GGTGCTGTCG ATGATGCAGG CCACGCTGAC GCTGCCGGGC ATCGCCGCCA TCGCGCTGGT GCTGGGCATG GCGATCGACG CCAACGTGCT GATCAACGAG CGCGTGCGCG AGGAACTGCG TGCCGGCGCC TCGCCGCAGA TGGCGATCCA CACCGGCTAC GAACGCGCCT TCGCGACCAT CCTCGACTCG AACGTCACCA CGCTGATCGC CGGCCTGGCG CTGCTCGCCT TCGGCTCCGG CCCGGTGCGC GGCTTCGCGG TGGTGCACTG CCTGGGCATC CTGACCTCGA TGTTCTCGGC CGTGATGTTC TCGCGCGGCC TGGTGAACCT CTGGTACGGG CGCAAGAAGA AGCTGCAGAA GGTCTCGATC GGCCAGGTGT GGCGACCGGC CGGTGCGGTC GCCGAACCCG GCTCCGGCGT CAGCGTCGGC AAGCAGGCCT GA
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Protein sequence | MNRYPWWKYL ILAIAVLVGS LYTLPNFFGE APAVQVSSGK ATVKVDASLV PRVQQALAGA GLSPDFVQLE GLSVRARFGD TDTQLKARDA VVKALNPDPS DPSYIVALNL ISRSPQWLTA MRALPMYLGL DLRGGVHFLM QVDMKAALTK KAESLTGDLR ALLRDKSIRH AGIVRNGDGV EVRLRDAPTQ ARALALLREQ QPDLLWVEST DGTEFKLAGT LKPEAARKVQ EQAVTQNINT LHNRINELGV AEPVIQQQGL DRVVVQLPGV QDVAKAKDII GRTATLEVRL VDDSTEAQAA LSGGGPVPFG TERYTERGAR AIIVKRQVIL TGENLTDAQA GFDENQQPAV HLTLDARGAR IFRDVTRENI NKRMAILLFE KGKGEVVTAP VIRSEIGGGR VQISGSMSPV ESADTALLLR AGSLAAPMEI IEERLIGPSL GAENIAKGFD SVLYGFVAIA IFMCCYYLLF GVFSTLSLGV NLLLLVAVLS MMQATLTLPG IAAIALVLGM AIDANVLINE RVREELRAGA SPQMAIHTGY ERAFATILDS NVTTLIAGLA LLAFGSGPVR GFAVVHCLGI LTSMFSAVMF SRGLVNLWYG RKKKLQKVSI GQVWRPAGAV AEPGSGVSVG KQA
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