| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0330 |
|---|
| Symbol | |
|---|
| ID | 6160382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 356999 |
|---|
| End bp | 359038 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641663079 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001789370 |
|---|
| Protein GI | 171057021 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCACA CCCTCCCGCC CGCCGAGGCC GGCGCCGTCG AACTGGCCCG TCGCAGCGCC
CGTTACGGTG CCCTCGACCT GGTCCTGCAG CCGGTCTGGA TCTACGACTT CGACCGCCGG
CGCGTGCACT GGGCCAACGC CGCCGCGCTG AAGATGTGGA AGGCCGAGTC GCTGCGGGAG
CTGTGCCGCC GCGACATGGG CGCCGACATG TCGGCCACCG TGGCGCGCCG CCTGGCGCAG
TACCAGGCCG ACTTCATCAC CCACGCCGCC GTCTTCAACG AACGCTGGAC GCTCTACCCG
GGCGGCACGC CGGTGGTGCT CAACCTCACC TACAGCGGCC ACCGGCTCGA CGACGGCCGC
ATGGCGATGC TCAGCCAGGG CAAGCCGGCG CTCGACGAGC TGCCCGAGTC GACCCGCTCG
GTCGAGGCGC TGCTGCACAC CGCGGTGATG ATCACGCTCT ACGACCTGTC GGGCGCGCCG
CTCTACCGCA ACCCGGCCGC ACGCGCGTCG GTGCGCTCGC CGGGCGAGAC CCTGCGCGAG
CGCATCGTCG ACCCGGCGTC GGGCGAGCGT TTCATGGCCG CGCTCGCCCA CGAGCAGGCG
GCCAACTTCA CGCTCGCCGT GCACACCGCG CAGGGCGAGC GCTGGCACGA GATGTCGGCG
CGGCACTGCC ATGACGCCGT CACCGGCCAC GACGCGGTGC TGGTCAGCGA GGCCGATGTC
AGCGCCCTCA AGCACACCGA GGCGCAGGCC AGCTTCCAGG CCCTGCACGA CGCCCTGACC
GGCCTGCCCA ACCGCGCCCA CGTGATGGAG CGCTTCGCCC AGGCGCTGGC CGACATCCGC
GACGCCGGCA TGGCGGCGGC GCTGATCTTC ATCGACCTCG ACCACTTCAA GGACGTCAAC
GACACGCTCG GCCACGCCGC CGGCGACGAG CTGCTGGTGC ACGTCGCCCG GCGCCTGCGC
AACGCCATCC GCAGCAGCGA CCAGGTGGCG CGGCTGGGCG GCGACGAGTT CCTGATCCTG
GTGGCCTCGA AGGACATCGT CGGCGAGGTC GAGCGGGTGC GCCAGCGCAT CTCGCAGGCG
ATCGCCCAGC CGCTGTCGCT GTCGGGCACC GAGGTGCGCG TGACGCCGAC GCTGGGCGTG
AGCCTGTACC CGCGCGACGG CCTCGACGTC GAGACCCTGC TGCGCAACGC CGACCTGGCG
ATGTACTGCG CCAAGGAGCG CGGCCGCAAC GACATGGCCT ATTACGAGGA AGGCCTGGCG
GTGGCGATGC GCCAGCGCAC CTCGCTCGAA GCCGATCTGC GCCACGCGCT CGAACGCGAC
GAGTTCGAGG TCTTCTACCA GCCGCGCGTG TGCGTGCACA CCCGCCGCGT CGTCGGCGCC
GAGGCGCTGC TGCGCTGGCG CTCGCCCGAG CGCGGCCTGG TGATGCCCGA CGACTTCATC
CCGGTGTGCG AGAGCAGCGG CCTGATCATG CCGATCGGCC TGCGGGTGTT CGAGCAGGTG
GCGCGCCAGC AGGCCGAGTG GGCCGCGCGC GGGCTCGACC TGCAGATCTC GGTCAACCTG
TCGCCGCGCC AGTTCTCGCA CCCGGGCCTG CTCGACGGCA TCCGCGCGGC GCTGCGGGTT
GCGGCCGGCC GTCCGGCGCG GCTGGAGATC GAGATCACCG AGTCGATGCT GCTGGCGCGC
GACGAGCGCC CGCGCGAGGT GCTCGACGCG TTCGAGGCGA TGGGCATGTC GATCGCGCTC
GACGACTTCG GCACCGGCTA CTCGAACCTG GCGGCGCTGC AGCGCTACCC GATCCACACC
GTCAAGATCG ACAAGACCTT CATCCAGGGC CTCGACACCG ACCGGCCGCT GGCCGACATG
ATCGTCTCGA TGTGCCGCCT GATGCGCCTG ACGGTGGTGG CCGAAGGGGT CGAGACCTGC
GACCAGCTCG ACTGGATCGC CGGCCGCGCG ATCGACCAGT ACCAGGGTTT CCTGTGTGCC
CGGGCGCTGC CGGCGGCGGC GTTCGAGGCC CGCTTCATCG ACGAGCCGCT GGCCGCCTGA
|
|---|
| Protein sequence | MSHTLPPAEA GAVELARRSA RYGALDLVLQ PVWIYDFDRR RVHWANAAAL KMWKAESLRE
LCRRDMGADM SATVARRLAQ YQADFITHAA VFNERWTLYP GGTPVVLNLT YSGHRLDDGR
MAMLSQGKPA LDELPESTRS VEALLHTAVM ITLYDLSGAP LYRNPAARAS VRSPGETLRE
RIVDPASGER FMAALAHEQA ANFTLAVHTA QGERWHEMSA RHCHDAVTGH DAVLVSEADV
SALKHTEAQA SFQALHDALT GLPNRAHVME RFAQALADIR DAGMAAALIF IDLDHFKDVN
DTLGHAAGDE LLVHVARRLR NAIRSSDQVA RLGGDEFLIL VASKDIVGEV ERVRQRISQA
IAQPLSLSGT EVRVTPTLGV SLYPRDGLDV ETLLRNADLA MYCAKERGRN DMAYYEEGLA
VAMRQRTSLE ADLRHALERD EFEVFYQPRV CVHTRRVVGA EALLRWRSPE RGLVMPDDFI
PVCESSGLIM PIGLRVFEQV ARQQAEWAAR GLDLQISVNL SPRQFSHPGL LDGIRAALRV
AAGRPARLEI EITESMLLAR DERPREVLDA FEAMGMSIAL DDFGTGYSNL AALQRYPIHT
VKIDKTFIQG LDTDRPLADM IVSMCRLMRL TVVAEGVETC DQLDWIAGRA IDQYQGFLCA
RALPAAAFEA RFIDEPLAA
|
|---|
| |