| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0240 |
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| Symbol | |
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| ID | 6160522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 257542 |
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| End bp | 259233 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641662984 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001789280 |
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| Protein GI | 171056931 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000308236 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCGCAC ACCCGACGCC GGATCGGGCG CCCCGGACAC CGATGGCCCG GGAAGACATC
CAGCTCGTCT TTGCGTCTTC CTTCGGCACG GTGTACGAGT GGTACGACTT CTACCTCTAC
GGCGCGCTCG CGCCCATCAT CGCGGCGCAG TTCTTCAGCG GGCTCGATCC GTCGGCCGGC
TTCATCTTCG CGCTGCTCGC CTTTGCCGCC GGCTTCATCG TGCGCCCGTT CGGCGCGCTG
GTGTTCGGTC GCCTGGGCGA CATGATCGGG CGCAAGTACA CCTTCCTGAT CACCATCTTG
CTGATGGGCC TGTCGACCTG CGTGGTCGGC GTGCTGCCGA GCTACGCCGA CATCGGCCTG
GCCGCGCCGG TGATGCTGAT CGCGCTGCGG CTGCTGCAGG GCCTGGCGAT GGGCGGCGAG
TACGGCGGCG CGGCGACCTA CGTGGCCGAA CACGCGCCGC CCGACCGGCG CGGTTTCTAC
ACCTCGTGGA TCCAGACCAC CGCCTCGCTC GGCCTGTTCA TGGCGCTGGT GGTGATCCTG
CTGCTGCGCC AGGTGCTCGG CGATGCCGCC TTCGCCGACT GGGGCTGGCG CATCCCGTTC
CTGCTGTCGA TCGTGCTGCT GGCGGTGAGC GTGTGGGTGC GGCTGTCGAT GAACGAATCG
CCGGCTTTCC AGCGCCTGCG TGAAACCGGC CGCACCTCGA AGGCGCCGAT CCGCGAGTCG
TTCGGCAACT GGCGCAACCT GCGGGTCGTG CTGCTGGCGC TGTTCGGGCT GGTGGCCGGG
CAGGCGGTGG TCTGGTACAC GGGCCAGTTC TACGCGCTGT TCTTCCTGAC CGGCGTGCTG
CGGGTCGAGC CGTCGACCGC GCAGTGGCTG ATGGTCGCGG CGCTGGCGAT CGGCACGCCG
TTCTTCGTGT TCTTCGGCGC GCTGGCGGAT CGCATCGGCC GCAAGCCGAT CATCATGGCC
GGCCTGGCGC TGGCGGCGGC GGGCTACTTC CCGATGTTCG AGGCGCTGAC GGTGGCGGCC
AACCCGGCGC TGGCCGAGGC GCAGGCGAAC GCGCGCATCG TGGTGGCAGC CGACCCGGCG
ACCTGCTCGT TCCAGGGCAG TCCGATCGCG CGTGAGGTCG ATTTCGCCTC GCCCTGCGAT
CTGGCCAAGC GCTTCCTGAC CGAACAGGGC GCCAGCTACG ACAACCGCGC GCTGCCGCGC
GGCGCCGCCA CCGTGGTGCG GGTCGGCAGC ACCGAGATCA CGCCGCCGCG CGGGGGGCTC
GCGGCCGGCG GCCACGGCTT CGACGACCGC AGCGTGCGCG CCATCGCGGC CTTCCGCGCC
GAGGTGCGCC AGGCTCTGCT GGCGGCGGGC TACCCGGAGC GGGCCGACCC GGCGCGCATG
GACAAGGTCG GCATCGTCGT GATCCTGAGC GCCTTCATGC TGCTGGTGAC GATGGTCTAC
GGCCCGATCG CGGCGATGCT GGTGGAGATG TTCCCCACCC GCATCCGCTA CACCTCGATG
AGCCTGCCGT ATCACATCGG CAACGGCTGG TTCGGCGGCC TGATGCCGTC GATCGCGTTC
GCCATCGTCG CCCACAGCGG CAACATGTAC GACGGCCTCT GGTACCCGGT GCTGATCGCC
GCCGGCTCCT GCGCGATCGG CCTGCTGCTG GTGCGCGAGA CGCGCGGGCG CGACATCTAC
GCGCAGGACT GA
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| Protein sequence | MSAHPTPDRA PRTPMAREDI QLVFASSFGT VYEWYDFYLY GALAPIIAAQ FFSGLDPSAG
FIFALLAFAA GFIVRPFGAL VFGRLGDMIG RKYTFLITIL LMGLSTCVVG VLPSYADIGL
AAPVMLIALR LLQGLAMGGE YGGAATYVAE HAPPDRRGFY TSWIQTTASL GLFMALVVIL
LLRQVLGDAA FADWGWRIPF LLSIVLLAVS VWVRLSMNES PAFQRLRETG RTSKAPIRES
FGNWRNLRVV LLALFGLVAG QAVVWYTGQF YALFFLTGVL RVEPSTAQWL MVAALAIGTP
FFVFFGALAD RIGRKPIIMA GLALAAAGYF PMFEALTVAA NPALAEAQAN ARIVVAADPA
TCSFQGSPIA REVDFASPCD LAKRFLTEQG ASYDNRALPR GAATVVRVGS TEITPPRGGL
AAGGHGFDDR SVRAIAAFRA EVRQALLAAG YPERADPARM DKVGIVVILS AFMLLVTMVY
GPIAAMLVEM FPTRIRYTSM SLPYHIGNGW FGGLMPSIAF AIVAHSGNMY DGLWYPVLIA
AGSCAIGLLL VRETRGRDIY AQD
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