| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0238 |
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| Symbol | |
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| ID | 6160557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 254405 |
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| End bp | 256600 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641662982 |
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| Product | DNA polymerase III, epsilon subunit |
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| Protein accession | YP_001789278 |
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| Protein GI | 171056929 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000829837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAAACCGG GCCTGCGACT GGCCGGCCTG CTGGGGCTGG TCGGCGTCTT GCTCCTGCTG
TGGCTGGGGC TGACCGGCGC GATGGTCTGG TCGTCGCTGG CGCAGGCCGA GCGCGCGGTG
GTGCGGGCGG CGCTCGAACC GCATGCGGGG CTGGTGGTGA TGGCCTTCGG TCTCGGCATG
CTGGGACTGG CCGCGGCGCT GCATGCCTGG CTGCTGCCGC GGCTGGCCGC ACCCGCGCAG
CTGCTCGACC AGGTGCGCGT GCTGCGCGAC ACCGACGTGC AACGCGAGAT CACGCCCGCC
GGCAGCGCCA CGCTGCGCGC GCTGGCCGAG GCCGTCAACG AGCTGGTGCG CCAGCGCGAG
GCACTGCGCC AGGACATGGC CGCGCAGGTG CTCGCCGCCA GCCGCGGCGT CGAGCTCGAG
CGCAGCCGAC TGGCCGCGCT GATGGCCGAG CTGACGCAGA GCGTGGTGGT CTGCAACCTC
GACGGCCGGG TGCTGCTCTA CAACAACCGT GCCCGCATGC AGTTCCGCGC GCTGTCGTCG
GCGCCGTCGC TGGCGGGTGG CTCGGAGCTG CTCGGCCTGG GCCGCTCGAT CTACGCCGCC
TTCGATCCCA AGCTGGTCAC GCACGCGCTC GAGAGCATCC AGCAGCGCCT GCAGCGCGGG
GCGGACAACC CGCTGGCGCA GTTCGTCACC ATCACCCGCT CGGGCCAGCT GCTGCGGGTG
CAGATGGCGC CGGTGCGCGA GGTCGCACCC GCCGACGGCA ACGCCGTGGC CGATCCGGCG
GCGCTGTCGG GTTTCGTGCT GATGCTCGAC AACGTCACCC GCGAGTTCGA GCAGGACACC
CTGCGCGACC AGCTGCTGCA CGGCCTGACC GAAGGCAGCC GCGGCTCGCT CGCCAACCTG
CAGGCCGCGG TCGAGATGCT CGACGACGAC GGCCTCGACG ATGCCCTGCG CCAGCGCTTT
CACGGCGTCA TCCGCGACGA GGTGCGCGCC ATGAGCGCGC GCATCCAGAC CCTGGCCGAC
AGCGCCACCG AAGGCATCAA GACCCGCTGG CCGATGGAGG ACATGCTCGG CGCCGACCTG
GTCGCCGCCG CGCAGCGCCG CATCGAGAGC CAGCTCGCGC TGCGGGTGTC GCAGGCCGAG
GTCGACACCG CGCTGTGGCT CAAGGTCGAC AGCTACTCGC TGCTGCTGGC GCTGCATTAC
CTGGCCGGGC GGCTGCAGGA CGAGTTCGAG ACCAAGCTTG TGCAGTTGCG CATCGCCGCG
GCGCCGGGCG GCCAGCACGC CCACCTCGAC CTGATCTGGA TGGGCCAGTC GCTCAGCACC
GAGACCGTGA TGAGCTGGGA GCTCGACCCG ATGCGCATCG GCGCCGAGAC CAGCCCGCTG
AGTGTGCGCG ACGTCGCCGA CCGCCACGGC GGCGAGTTCT GGTTCGAGCG CGAGCGGGTG
CGGCATCAGG CCTTCTTTCG CTTCCTGCTG CCGCTGGCCG CGCCGCAGGA ACAGCTCGAC
GCCAGCCGCC TCATGTCCGC CATGCACGCC GAGGGCCGGC CGGAGTTCTA CGATTTCGAC
CTCTTCAAGC GCCTGGAGCA GCACCACGTG CTCGACGAGC GCCGCCTGGT CGACCTGGCC
TACACCGTGT TCGACACCGA GACCACCGGC CTCAATCCGT CCGATGGCGA CGAGATCATC
CAGATCGGTG CCACCCGCAT CAGCGGCGGC AAGCTGCGCC GGCAGGAGAG CTTCGAGCAG
CTGGTCGATC CGCAGCGGCC GATACCGCCC GCGGGCATCC CGATCCACGG CATCAAGCCC
GACATGGTGG CCGGCCAGCC GACCATCGAT CACGTGCTGC CGGCCTTCCA CGCCTTTGCG
CAGGACACCG TGCTGGTGGC GCACAACGCC GCCTTCGACA TGCGTTTCCT GCAGCTCAAG
CAGGACCGCA CCGGGCTCGT CTTCGACCAG CCGGTGCTCG ACACGCTGCT GCTGTCGGCG
GTGGTGCACC CCAACCAGGA ATCGCACCGA CTCGAGGCGA TCGCCGAGCG CTTCAGCATC
ACCGTGGTCG GCCGCCACAC CGCGCTGGGC GACGCGATGG TGACGGCCGA GGTCTTCGTG
CGCCTGATCC CGCTGCTGCA CGCGATGGGC ATCGAGACGC TCGGCCAGGC GCGCGAGGCG
GCGCAGAAGA CCTATTACGC GCGGCTCAAG TACTGA
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| Protein sequence | MKPGLRLAGL LGLVGVLLLL WLGLTGAMVW SSLAQAERAV VRAALEPHAG LVVMAFGLGM
LGLAAALHAW LLPRLAAPAQ LLDQVRVLRD TDVQREITPA GSATLRALAE AVNELVRQRE
ALRQDMAAQV LAASRGVELE RSRLAALMAE LTQSVVVCNL DGRVLLYNNR ARMQFRALSS
APSLAGGSEL LGLGRSIYAA FDPKLVTHAL ESIQQRLQRG ADNPLAQFVT ITRSGQLLRV
QMAPVREVAP ADGNAVADPA ALSGFVLMLD NVTREFEQDT LRDQLLHGLT EGSRGSLANL
QAAVEMLDDD GLDDALRQRF HGVIRDEVRA MSARIQTLAD SATEGIKTRW PMEDMLGADL
VAAAQRRIES QLALRVSQAE VDTALWLKVD SYSLLLALHY LAGRLQDEFE TKLVQLRIAA
APGGQHAHLD LIWMGQSLST ETVMSWELDP MRIGAETSPL SVRDVADRHG GEFWFERERV
RHQAFFRFLL PLAAPQEQLD ASRLMSAMHA EGRPEFYDFD LFKRLEQHHV LDERRLVDLA
YTVFDTETTG LNPSDGDEII QIGATRISGG KLRRQESFEQ LVDPQRPIPP AGIPIHGIKP
DMVAGQPTID HVLPAFHAFA QDTVLVAHNA AFDMRFLQLK QDRTGLVFDQ PVLDTLLLSA
VVHPNQESHR LEAIAERFSI TVVGRHTALG DAMVTAEVFV RLIPLLHAMG IETLGQAREA
AQKTYYARLK Y
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