Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0224 |
Symbol | |
ID | 6161944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 236825 |
End bp | 240226 |
Gene Length | 3402 bp |
Protein Length | 1133 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641662968 |
Product | hypothetical protein |
Protein accession | YP_001789264 |
Protein GI | 171056915 |
COG category | [S] Function unknown |
COG ID | [COG4913] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00190066 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGAATG AGGCGCTGGC GTTGGACTTC GGCGCCGACG AGGCTGACGG CGCACTGGCG GGCTTTCGCC TGCAGCGCCT GGAGGTCTTC AACTGGGGCA CCTTCGATGC CCGCGTCTGG ACGCTGCGTG CCGACGGCCG CAACGTGCTG CTCACCGGCG ACATCGGCTC GGGCAAGTCG ACGCTGGTCG ACGCCGTCAC CACGCTGCTG GTGCCGGCGC ACCGCGTCGC CTACAACAAG GCGGCCGGCG CCGAGGCGCG CGAACGCACG CTGCGCAGCT ACGTGCTCGG CCACTACAAG GCCGCGCGCA GCGAGCTCGG CGGCTCGGGC CGGCCGGTGG CGCTGCGTGG GCCCGACAGC TACTCGGTGA TCCTGGGCGT GTTCCACAAC GCCGGTTACG ACCAGACCGT GACGCTGGCG CAGGTCTTCT GGCTCAAGGA CCCGCAGGGC CAGCCGCTGC GCCTGTACGC GGTGGCGGAA AAGGCCTTGA GCATCGCCGC CGACTTCGCC GATTTCGGCA CCGACATCGT CAAGCTGCGC AAGCGCCTGC GTGCCGCCAA GGTGGTGGTG GAGGACAGCT TTCCGCCCTA CGGCGCGCTG TTCCGGCGCC ACTTCGGCAT CCACAACGAG CAGGCGCTGG AGCTGTTCCA CCAGACGGTG TCGATGAAGT CGGTCGGCAA CCTGACCGAC TTCGTGCGCA GCCACATGCT CGAACCCTTC GACGTGGCGC CGCGGCTGGT TGCGCTGATC GCCCACTTCG ACGACCTCAA CCGCGCCCAC GAGGCGGTGC TCAAGGCGCA GCGCCAGGTG GCGCTGCTGC AGCCGCTGGT GGCCGACTGC GAGCGCCATG GCGAACTCGC CGCCGCGGTC GAGGCCCAGC GCGCCGCACG CGAGGCGCTG CAGGCCTGGT TTGCCGGGCT CAAGGCCGAG CTGCTGGACC AACGCCTGCA GCACCTGGGC GACGATCTGG CGCGCCACCT CAGCCAGATC GAGCGCCTCA CCGCCCTGCA GCGCGAGCAG CTCTCGCAGG AACGCGAGCT GCGGCGCGCG ATCGCCGACA GTGGCGGCGA CCGCATCGAG CGCCTGGCGC TGGACATCGC GCGCAAGGAA ACCGAGAAAC GGCGCCGCAC CGACAAGGCC GGCCGCTACG ACGCGCTGCG CCAGACGCTC GGCCTGCTGG CGATGCACAG CGCCGAGGAT TTCCTGAACC AGCGCGCCTT GTGTGCGCCG CTGCGCGAGG CCGCTGCCGA GCACGAGGCG AGGGCGCAGA ACGCGCTCAA CGAACTGGGC GTGGCCTTTG CCCAGGGCCG CAAGGAACAC GACGAGATGC TGGCCGAGAT CGCCAGCCTG AAGGCGCGCC GCAGCAACAT CGACGCGCAG CAGGTGGTGC TGCGTGCTGC GTTGTGCGAG GCCTTGAAGC TGCGCGAGGC CGACCTGCCG TATGCCGGCG AACTGATCCA GGTGCGCGAC GACGAGCGCG ACTGGGAGGG CGCCGCCGAA CGGCTGCTGC GCAGCTTCGG CCTGTCGCTG CTGGTGCCCG ACGAACACTA CGCCGCGGTC AGCGACTGGG TCGACCGCAC GCAGCTGAAG GGCCGGCTGG TCTACTTCCG CATCCGTCCC AAGGCCAGGG GTTCGAGCCA GGACGGCCGC GGCGATCTGC CCGCGCTGCA GCCCGATTCG CTGGCGCGCA AGCTGGCGAT CAAGCCCGAC ACGCCGTTCT ACGGCTGGCT CGAGCGCGAA CTGGCGCACC GCTTCGACCT GGCCTGCTGC ACCGGGCAGG AGCAGTTCCG CCGCGAGGCG CGCGCCATCA CCCGCGCCGG CCAGATCAAG TCACCGGGCG AACGCCACGA GAAGGACGAC CGCCACCGCA TCGACGACCG CAGCCGCTAC GTGCTCGGCT GGAGCAACCA GGCCAAGATC GCCGCGCTCG AATCCAGGGC CCGGGTGCTG CAGGCGCGGC TGATCGAGAC CGGCCAGCGC CTGGCCGCGC TGCAGAACGA ACAGGCGGCC CTGCGCGAGC GACTGCAGGC ACTCGACAAG CTGGAGGAAT ACCGCGATTT CACCGAGCTC GACTGGCGCA GCAGCGTCAC CGAACTGGCC GCCTTGCAGG ATGAGAAACA GCGGCTGGAG GCCGCCTCCG ACGTGCTGAA GACGCTGGCC GTGCAGCTGG CCACGCTGGA GTCGGTCCGC GACGACACCG GTCGCAAGCT GAAGGATCGT GAAGCCGAAC AGACCCGCTG CGCGCTGAAA CACGAGCAGG CCCGGGCGCT GCGCGAGCAG GCGCAGCAGA AGCTGGACGC CGCCGACTTC GCCGCTCGGG CCGCGCACTT CGGCCTGATC GAGGGCTGGC GTGCGCTGGC CCTGGGCGAT CAGGCCCTGA GCGTCGAAAA CTGCGACGGC CGCGAGCAGG AGATGCGGCG CTGGCTGCAG GCGCGCATCG ACGCCGACGA CAAGCGGCTC GCCCACCTGG GCGAGAAGAT CGTGCGCGCG ATGGCCCAAT ACAAGGAAGC CTTCAAGCTC GACACCCAGG AGGTCGATGC CAGCGTGGCC GCCGGCGCCG AGTACCGCGC GATGCTGGCG CAGCTCAAGG CCGACGACCT GCCGCGGTTC GTCGCCCGCT TCAAGGAGCT GCTCAATGAA AACACCATCC GCGAGGTGGC GCATTTCCAG TCGCAACTGC ACCGCGAGCG CGAGACCATC AAGGAGCGCA TCGCGCGCAT CAACGAGTCG CTGACGCAGA TCGACTACAA CCCCGGCCGC TTCATCGCGC TCGAAGCCCA GACCGCCACC GACGCCGACG TGCGCGACTT CCAGACCGAG TTGCGCGCCT GCACCGAAGG CACGCTGACC GGCTCGGACG ATGCGCAGTA TTCCGAGGCC AAGTTCCTGC AGGTCAGGCA GATCATCGAG CGTTTCCGCG GCCGTGAAGG TTCGGCCGAA GCCGACCGGC GCTGGGCCGC CAAGGTGACC GACGTGCGGC AGTGGTTCGT GTTTGCCGCC AGCGAACGCT GGCGCGAGGA CGGCAGCGAG TTCGAGCACT TCTCCGATTC GGGCGGCAAG TCCGGCGGGC AGAAGGAGAA GCTCGCCTAC ACCATCCTGG CCGCCAGCCT GGCCTACCAG TTCGGGCTGG AATGGGGCGC GCTGCGCTCG CGGACGTTCC GCTTCGTCGT CATCGACGAG GCCTTCGGCC GTGGCTCGGA CGAGTCGGCG CAATACGGCC TGCGCCTGTT CCAGCAGCTC AACCTGCAGC TGCTGATCGT CACGCCGCTG CAGAAGATCC ACATCATCGA ACCCTTCGTG GCCAGCGTGG GCTTCGTGCA CAACGAGGAC GGCAGCGCCT CGAAGCTGCG CAACCTCGGC ATCGAGGACT ACCGCGCACA GCGCGACGGG TCGATGCCAT GA
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Protein sequence | MKNEALALDF GADEADGALA GFRLQRLEVF NWGTFDARVW TLRADGRNVL LTGDIGSGKS TLVDAVTTLL VPAHRVAYNK AAGAEARERT LRSYVLGHYK AARSELGGSG RPVALRGPDS YSVILGVFHN AGYDQTVTLA QVFWLKDPQG QPLRLYAVAE KALSIAADFA DFGTDIVKLR KRLRAAKVVV EDSFPPYGAL FRRHFGIHNE QALELFHQTV SMKSVGNLTD FVRSHMLEPF DVAPRLVALI AHFDDLNRAH EAVLKAQRQV ALLQPLVADC ERHGELAAAV EAQRAAREAL QAWFAGLKAE LLDQRLQHLG DDLARHLSQI ERLTALQREQ LSQERELRRA IADSGGDRIE RLALDIARKE TEKRRRTDKA GRYDALRQTL GLLAMHSAED FLNQRALCAP LREAAAEHEA RAQNALNELG VAFAQGRKEH DEMLAEIASL KARRSNIDAQ QVVLRAALCE ALKLREADLP YAGELIQVRD DERDWEGAAE RLLRSFGLSL LVPDEHYAAV SDWVDRTQLK GRLVYFRIRP KARGSSQDGR GDLPALQPDS LARKLAIKPD TPFYGWLERE LAHRFDLACC TGQEQFRREA RAITRAGQIK SPGERHEKDD RHRIDDRSRY VLGWSNQAKI AALESRARVL QARLIETGQR LAALQNEQAA LRERLQALDK LEEYRDFTEL DWRSSVTELA ALQDEKQRLE AASDVLKTLA VQLATLESVR DDTGRKLKDR EAEQTRCALK HEQARALREQ AQQKLDAADF AARAAHFGLI EGWRALALGD QALSVENCDG REQEMRRWLQ ARIDADDKRL AHLGEKIVRA MAQYKEAFKL DTQEVDASVA AGAEYRAMLA QLKADDLPRF VARFKELLNE NTIREVAHFQ SQLHRERETI KERIARINES LTQIDYNPGR FIALEAQTAT DADVRDFQTE LRACTEGTLT GSDDAQYSEA KFLQVRQIIE RFRGREGSAE ADRRWAAKVT DVRQWFVFAA SERWREDGSE FEHFSDSGGK SGGQKEKLAY TILAASLAYQ FGLEWGALRS RTFRFVVIDE AFGRGSDESA QYGLRLFQQL NLQLLIVTPL QKIHIIEPFV ASVGFVHNED GSASKLRNLG IEDYRAQRDG SMP
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