Gene Lcho_0219 details

Gene Information

• Locus tag: Lcho_0219
• ID: 6163483
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 230688
• End bp: 231263
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641662963
• Product: hemerythrin HHE cation binding domain-containing protein
• Protein accession: YP_001789259
• Protein GI: 171056910
• COG category: [S] Function unknown
• COG ID: [COG3945] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00618287
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACCCAGA CCGCCCTGCG CGTGATCCGC GACGAACACT CGGCCCTGAG CGCGATGCTC 
AGCTCGATCC CGCTGCTGCT GGCCGAGAGC AAGCGCAACG GCACCCAGCC GTCGTTCGAC 
GTGCTGCGCG CGATGCTGTT CTACATCGAC GAGTTCCCCG AGCGGCTGCA CCACCGCAAG 
GAGACCGAAC TGCTGTTCCC GCTGCTGCGC CAGCGCAACG CCGACTGCAC CGAGGCGCTC 
GACAAGCTCG ACCGCGACCA CGCTGCCGGC GAGCGCGCGA TCCGCGCCCT CGAGCACGCG 
CTGCTGGCCT ACGAGATGAT GGGCGAGGCC CGCCGCGGCG CGTTCGAGGA CGCGCTGTCG 
AGCTACCTCG AGTTCTACCG CGCCCACATG CGCCTCGAAG AAGACGTGGT GCTGCCGGCC 
GCGCAGAAGG TGCTGACCGA AGCCGACTGG CAGCAGCTCG ACGCGGCCTT TGCGCAGAAC 
CGCGACCCGC TGACCGGCCA CACGCCCGAC CAGGCCTACG AACAGCTGTT CCGCCGCATC 
GTCAACAGCG CGCCGGCGCC GGTCGGACTC GGTTGA 

 

Protein sequence

MTQTALRVIR DEHSALSAML SSIPLLLAES KRNGTQPSFD VLRAMLFYID EFPERLHHRK 
ETELLFPLLR QRNADCTEAL DKLDRDHAAG ERAIRALEHA LLAYEMMGEA RRGAFEDALS 
SYLEFYRAHM RLEEDVVLPA AQKVLTEADW QQLDAAFAQN RDPLTGHTPD QAYEQLFRRI 
VNSAPAPVGL G