| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0144 |
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| Symbol | |
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| ID | 6163745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 147928 |
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| End bp | 151071 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641662888 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001789184 |
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| Protein GI | 171056835 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAATT GGATCGTCCG ATACAGCCTG CACAACCGGC TGCTCGTCCT CGCATTCGCC
GCCATCCTGA TGGTCTACGG GGCCATGACG GCTCTGCGCA CGCCGGTGGA CGTGTTTCCC
GACCTCAACA AGCCGCTCGT CACCGTGCTG ACCGAAGCCG GCGGCATGGC GCCCGAGGAG
GTCGAGCAAC TGGTGACCTT CCCGCTCGAA ACCGCGCTCA ACGGCATGCC CGGCGTGACG
CGGGTGCGCT CGACCTCCGG CGTGGGCCTG GCGGTGGTCT ACGCCGAGTT CGACTGGGGC
ACCGACATCT ACCGCAACCG CCAGCTGGTC GCCGAACGGC TGGCGCTGGT GCGCGAGCAG
TTGCCCGCCG GCATCAACCC GTCGATGGGG CCGGTGTCGT CGATCATGGG CGAGGTCATG
CTGCTGGCCC TGCCGCTCGA TGGTGGCAAG GATGGCGCGC GGGCCACGCC GATGCAGGCG
CGCGAGTACG CCGACTTCGT GCTGCGCCCG CGGCTGCTGT CCATCCCCGG GGTGTCGCAG
GTGATCCCGA TCGGCGGCGA CGTGCGGCAG TTGCGGGTCG AACCCGACAC GGCGCGCATG
GCGCAGTTCG GTGTTTCCCT GAGCCAGATC GAGAGCGCGC TGCAGGGTTT CTCGTCCAAC
GCCGGCGGCG GGTTCATCGA CCTGAACAGC CGCGAATACC TGATCCGCCA CATCGGCCGT
ACCAACCGGG TGGAGGACCT GCAAGGCCTG GCGGTGGCCT GGTCCGGCGG GCGCGCGATC
CTGCTGGAGC AGGTCGCCAG CGTGCGCTAC GCCGCCGGCC AGAAGCGCGG CGACGGCGGC
TACAACGGCG TGCCGGCGGT GGTGGTGAGC ATCCAGAAAC AGCCCGCGGC CGACACCGTG
CGCCTCACCC GCGACATCGA GTCGGCGCTG GACGAACTCA AGCAGGGCCG GCCCGCCGGC
CTGAGCGAGC CGCGCGTGCT GTTCCGGCAG GCCGACTTCA TCCTGGCCTC GGTGGGCAAC
GTCAGCGAGG CGCTGCGGGA CGGGGCGGTG ATGGTCGCCA TCGTGCTGTT CGCCTTCCTG
CTGTCGGCGC GCACCACGCT GATCTCGCTG GTCGCGATTC CGCTGTCGCT GGCGGTCACG
GCGCTGATCC TCAAGCTGAT GGGGCAGTCC ATCAACGTGA TGACGCTGGG CGGTCTGGCG
ATCGCCATCG GCGAGCTGGT CGACGATGCG GTGGTGGACG TCGAGAACAT CCTGCGCCGC
CTGAAGCAGA ACCGCGCGCT GGCCCGGCCG CTGCCGCTGC TCGAAGTGGT GCGCCAGGCC
AGCGTCGAGG TCCGCTCGGG CATCGTCTAC GCCACCATCA TCGTGGCGCT GGTGTTCGTG
CCGCTGTTCG CGCTGCCGGG CATCGAGGGC CGGCTGTTCA CGCCGCTGGG CATCGCCTAC
ATCGTCTCGA TCCTGGCGTC GATGTTCGTG TCGATGACGG TCACGCCGGT GCTGTGTTCC
TACCTGCTGC CGCGCATGAA ACGCCTCGGC CACGGCGACA GCCCGGTGGT GGCGCGTCTG
AAGCGCCTGG ACGAGCGGCT GCTGAACTGG TCGTTCGCGC GCGCCCGGCT GCTGATGAGC
CTGGCGGTGA TGGCGGTGGT GGTGGCCGCC ACCACCGTGC CCTACTTCCC GCGTGCCTTC
CTGCCGCCGT TCAACGAGGG CTCGCTGGTG CTGGGCATGG TGTTCAACCC GGGCACCTCG
CTGGCCGAGG CGAACCGGAT GGGCTCATTG GCCGAGACGC TCATCCAGGA GGTGCCCGAG
GTCACCCAGG TCGGCCGTCG CACCGGTCGT GCCGAGCTCG ACGAACACGC CGAAGGTGTG
CACTCGGCCG AGATCGACGT CGACCTCAAA CGCAGCGATC GCAACCGCGA ACAGATCATG
GCGCACCTGC GCGCCAAGCT CGCGGTGCTG CCGGCGCAGG TCGCCATCGG CCAGCCGATC
TCGCACCGCC TCGACCACCT GCTGTCGGGC GTGCGGGCGC AGATCGCGCT GAAGGTGTTC
GGCGACGACA CCGACACGCT ACGCGGTCTG GCCGAGCAGT TGCGGCAAGG TCTGGTCAGC
GTGCCAGGCC TGGTCGACCT GACGGTCGAG AAGCAGGTGC TGATCCCGCA GATCACCGTG
CGGATCGATC ACCGCAAGGC GGCCCAGGCG GGCCTGTCGC CGGGTGAGGC GATCCGGGTG
CTGCAGGCGC TGACGGACGG CGCGCACGGC GCCCAGATCG TCGACGGCGC GCGCCGCTAC
GACCTGGTGC TGCGCCTGCC CGACGCGGCG CGCAGCCCGC AGGACCTGGC CCGCACGCTG
ATCGACACGC CCGCGGGCCG GCTGCCGGTA TCGGCCATCG CCAGCGTCGA GGAGAACGAC
GGCCCGAACC AGATCGGGCG CGAGAACGGC CGGCGCCGCA TCGTCGTCTA CGCCAACACC
GACGGCTCGG ACATGAGCCG CATCGTGGCC GACGTGCGGG CCGTGATCGC CAGCACCCCC
ATGCCGCAGG CCACCTTCGT CAGCCTGGAG GGTCAGTTCC AGGCCCAGGA GCAGGCCACG
CAGCTGATCG TCGGGCTGTC GCTGGTGTCG CTGCTGCTGG TCGCGCTGGT GCTGTACTCG
CGCTACAAGT CGATGGTGCT GGCGGGCATC ATCATGGCCA ACATCCCGCT GGCCTTGATC
GGCAGCGTGG TGGCGATGTG GATCGCCGGG GTCAGCCTGT CGGTGGCCTC GATGGTGGGC
TTCATCACGC TGGCGGGCAT CTCGACGCGC AACGGCATCC TGAAGGTCAG CCACTACGTC
AACCTGTGCC GGCTCGAAGG GGAGCAGTTC GGCCCGGCGA TGGTGGTGCG CGGCTCGCTG
GAGCGGCTCA CGCCGGTGCT GATGACCGCG CTGGTGGCGG CCTTCGCGCT GACGCCGCTG
CTGCTGTCGG CCGATGCCCC GGGCAAAGAG ATCCTGCATC CGGTGGCGGT GGTGATCTTC
GGCGGGCTGG TCAGCTCGAC GCTGCTCGAC ACCCTGCTCA CGCCGGTGCT GTACCTGAAG
TTCGGCCGCA AGGCCACCGA GCGCCTGCTC GAACAGGAGC AGCAGCCCGG CACCACGACG
CAAGGCCCTC AAGAGGCTTA CTGA
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| Protein sequence | MFNWIVRYSL HNRLLVLAFA AILMVYGAMT ALRTPVDVFP DLNKPLVTVL TEAGGMAPEE
VEQLVTFPLE TALNGMPGVT RVRSTSGVGL AVVYAEFDWG TDIYRNRQLV AERLALVREQ
LPAGINPSMG PVSSIMGEVM LLALPLDGGK DGARATPMQA REYADFVLRP RLLSIPGVSQ
VIPIGGDVRQ LRVEPDTARM AQFGVSLSQI ESALQGFSSN AGGGFIDLNS REYLIRHIGR
TNRVEDLQGL AVAWSGGRAI LLEQVASVRY AAGQKRGDGG YNGVPAVVVS IQKQPAADTV
RLTRDIESAL DELKQGRPAG LSEPRVLFRQ ADFILASVGN VSEALRDGAV MVAIVLFAFL
LSARTTLISL VAIPLSLAVT ALILKLMGQS INVMTLGGLA IAIGELVDDA VVDVENILRR
LKQNRALARP LPLLEVVRQA SVEVRSGIVY ATIIVALVFV PLFALPGIEG RLFTPLGIAY
IVSILASMFV SMTVTPVLCS YLLPRMKRLG HGDSPVVARL KRLDERLLNW SFARARLLMS
LAVMAVVVAA TTVPYFPRAF LPPFNEGSLV LGMVFNPGTS LAEANRMGSL AETLIQEVPE
VTQVGRRTGR AELDEHAEGV HSAEIDVDLK RSDRNREQIM AHLRAKLAVL PAQVAIGQPI
SHRLDHLLSG VRAQIALKVF GDDTDTLRGL AEQLRQGLVS VPGLVDLTVE KQVLIPQITV
RIDHRKAAQA GLSPGEAIRV LQALTDGAHG AQIVDGARRY DLVLRLPDAA RSPQDLARTL
IDTPAGRLPV SAIASVEEND GPNQIGRENG RRRIVVYANT DGSDMSRIVA DVRAVIASTP
MPQATFVSLE GQFQAQEQAT QLIVGLSLVS LLLVALVLYS RYKSMVLAGI IMANIPLALI
GSVVAMWIAG VSLSVASMVG FITLAGISTR NGILKVSHYV NLCRLEGEQF GPAMVVRGSL
ERLTPVLMTA LVAAFALTPL LLSADAPGKE ILHPVAVVIF GGLVSSTLLD TLLTPVLYLK
FGRKATERLL EQEQQPGTTT QGPQEAY
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