| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0129 |
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| Symbol | |
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| ID | 6162710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 132156 |
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| End bp | 133049 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641662873 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001789169 |
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| Protein GI | 171056820 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0648318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTGC ACTTCACCAA GATGCAGGGC GCGGGCAACG ACTTCGTCGT GCTCGACGCC
ACCCGCGCGC CGCTGGCGCT GAGCGCAGCC GACTACCGGT TCCTGGGCGA TCGGCGCTTC
GGCGTCGGCG CCGACCAGAT CCTGGTGGTC GAGCGCAGCA CCACCCCGGG CGTCGATTTC
CGGTACCGCA TCTTCAACGG CGGCAGCGGC GACGAGGTCG AGCAGTGCGG CAACGGCGCA
CGCTGCTTCG CGCGCTTCGT GCGCGACAAC GGCCTGAGCC AGCAGGTGCG CGTCAAGGTC
GAGACCGTCA ACAGCCTGAT CGAGCTGCAC GTCGAGGCCG ACGGCCGCGT CACCGTCGAC
ATGAACCAGC CGATCTTCGA GCACGCGCTG ATCCCGTTCG ACTCCGCCGG CCTGAGTGCG
CGGCCGCACA ACGGCCACGG CAACGGCTTC GAGCTGTGGC CGCTGCAACT GCCCGGCGCC
AGCCTGCCGT CGGTCGACGT GGCGGTGCTG TCGATGGGCA ACCCGCACGC CGTGCAGCGC
GTGCACGACG TCGACACCGC GCCGGTGGCC GAGATCGGCC CGCGCGTCGA GACCCATGCG
CGCTTCCCGC GCCACGTCAA CGCCGGTTTC ATGCAGGTGA TGTCGCGCCG CGAGGTGCGC
CTGCGCGTGT TCGAGCGCGG CGCCGGCGAA ACGCTCGCCT GCGGCACCGG CGCCTGCGCC
GCCGTGGTGG CCGGCATCCG GCTGGGCTGG CTCGACCCCG AGGTCGACGT GCAGACCCGC
GGCGGCCTGC TCACCATCGC CTGGGCCGGC CTGGGCCACC CGGTGCTGAT GACCGGTCCG
GCACAGACCG TCTTCACCGG CGACATCGAC CTGCCGACCA CCTCGGTTCA ATGA
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| Protein sequence | MRLHFTKMQG AGNDFVVLDA TRAPLALSAA DYRFLGDRRF GVGADQILVV ERSTTPGVDF
RYRIFNGGSG DEVEQCGNGA RCFARFVRDN GLSQQVRVKV ETVNSLIELH VEADGRVTVD
MNQPIFEHAL IPFDSAGLSA RPHNGHGNGF ELWPLQLPGA SLPSVDVAVL SMGNPHAVQR
VHDVDTAPVA EIGPRVETHA RFPRHVNAGF MQVMSRREVR LRVFERGAGE TLACGTGACA
AVVAGIRLGW LDPEVDVQTR GGLLTIAWAG LGHPVLMTGP AQTVFTGDID LPTTSVQ
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