Gene Lcho_0120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0120 
Symbol 
ID6162778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp123915 
End bp124490 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content74% 
IMG OID641662864 
Productintradiol ring-cleavage dioxygenase 
Protein accessionYP_001789160 
Protein GI171056811 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3485] Protocatechuate 3,4-dioxygenase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0339331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCGC TGTGGCTGGG CCCGCGGGCC CAGAACACCG CCGGCCTGCG GCCGACGCCG 
AGCCAGACCG AAGGCCCGTT CTACCCGTTG CAACTGCCCG CCGACAGCGA TTTCGACCTG
CTGCGCAACG GCGCGGCGCG CGCCAGCCGC GGCGAGCCGG CCTGGGTCGA GGGCACGGTG
AGCGATCTGC GCGGCCGGCT GCTCGAAGGC GCGGTGGTCG AGATCTGGCA ATGCGATGCC
GACGGCCATT ACCACCACCC CGGCGACGGC GGCCGCGCCG ATCCGGCCTT CCAGGGCTTC
GGCCGCGTCA CGGTCGGCGC CGACGGCCGC TACCGTTTCC GCACCCTGCG CCCGGCGCCC
TACAGCGGCC GCACGCCGCA CATCCACTTC AAGGTGCGAC ACCAAGGCCA CGAGCTGCTG
ACCACCCAGC TCTACGTGCA GGGCGACCCC GGCAACGAGC GCGACGGCCT CTGGCGGCGC
CTGCGCGACC CGCGCGACCG GGCTGCGCTG ACGGTGCCGT TCGAGCCCGG CGTCGACGGC
CTGCGGGCGC GTTTCCCGAT CGTCGTCGAG GCCTGA
 
Protein sequence
MPALWLGPRA QNTAGLRPTP SQTEGPFYPL QLPADSDFDL LRNGAARASR GEPAWVEGTV 
SDLRGRLLEG AVVEIWQCDA DGHYHHPGDG GRADPAFQGF GRVTVGADGR YRFRTLRPAP
YSGRTPHIHF KVRHQGHELL TTQLYVQGDP GNERDGLWRR LRDPRDRAAL TVPFEPGVDG
LRARFPIVVE A