| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0116 |
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| Symbol | |
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| ID | 6161885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 119438 |
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| End bp | 120034 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641662860 |
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| Product | OmpW family protein |
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| Protein accession | YP_001789156 |
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| Protein GI | 171056807 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3047] Outer membrane protein W |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0772399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAGC TCTGCATCGC TCTCGCCGTC GCCGCCCTCG CTCCCGTCGC CATGGCCCAG
TCGGCCGGTG ACATCGTGGT GCGTGCGCGC GCCGTCTACC TCGACGCAGC CAACAAGGAC
ACCGTCGCCA TCACCGACGT GTCGATCAAC AGCAAGTGGC TGCCGGAAGT CGACTTCACC
TACTACGTGA CGCCGAACTT CGCCGCCGAA CTGATCCTGA CCTACCCGCA GAAGCAGGAC
GTCAGCTCGA CCGCCCACGG CGGCTTCATC GGCACCCTCA AGCACCTGCC GCCGACGCTG
ACCGCGCAGT ACCACGTCAC CGGCCTGGGC GCGATCAAGC CCTACGTGGG CGCCGGCGTG
AACTACACGC GCTTCTCCAG CGTGAACCTG CTCAACGGCG CGCTGTCGGT CGAGAAGAAC
AGCTTCGGCC TGGCCTTCCA GGCAGGCGTC GACTACGCGA TCGACAAGCA GTGGTCGCTC
AACCTCGACG TCAAGAAGGT GCAGATCCGC ACCGACCTGA GCCTCGGCGC GACCAATCTG
GGCACGCTCA AGGTCGATCC GACGCTGATC GGTATCGGCT TGGGCTACAA GTTCTGA
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| Protein sequence | MKKLCIALAV AALAPVAMAQ SAGDIVVRAR AVYLDAANKD TVAITDVSIN SKWLPEVDFT
YYVTPNFAAE LILTYPQKQD VSSTAHGGFI GTLKHLPPTL TAQYHVTGLG AIKPYVGAGV
NYTRFSSVNL LNGALSVEKN SFGLAFQAGV DYAIDKQWSL NLDVKKVQIR TDLSLGATNL
GTLKVDPTLI GIGLGYKF
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