| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0110 |
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| Symbol | |
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| ID | 6162186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 113673 |
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| End bp | 114638 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641662854 |
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| Product | NADH dehydrogenase |
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| Protein accession | YP_001789150 |
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| Protein GI | 171056801 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00120981 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAGG TCTTGGTTCT GGGTGGCACC GGTTTTGTCG GCCGGGCATT CGCGGCGGCC
TGGGTCGCCG CCCACGGCGG CACCGGTGCC GGCTTGCGCA TTCCGAGCCG CCGGCCGGCA
CGCGCCAAGG CGCTCGCGAT GCTGCCGACG GTCGAGCTGG TCGAGGCCGA CGTGCACGAC
CCGGCCCAGC TGCTCGCGCT GATGGCCGGC TGCGATGCGG TGGTCAACCT GGTGGCGGTG
CTGCATGGCG ACGCGCGACG CTTCGAGCAG GTGCACGTGA CGCTGCCGCA GCGCATCGCC
GGCGCCTGTG CGGCCGCCGG CGTGACGCGG CTGGTGCATG TCAGCGCGCT GGGGGTGGAC
GATGCTGCCG ACGCGCCGCC CGCGCCCTCG CTCTACCTGC GCAGCAAGAC GCAGGGCGAG
CAGGTGCTGC GCGCCGCGCC CGGCCTGGCG CTGACGCTGC TGCGCCCGAG CGTGATCTTC
GGCGCCGAGG ACCGCTTCAT CAACCTGTTC GCAGCCCTGC AGGCGCTCGC GCCGGTGATG
CCGCTGGCCG GCGCCGCGGC ACGTTTCCAG CCGGTCTGGG TCGACGACGT GGCGCATGCG
ATCGTGGCCT GCCTGACCGA CCCGCGCCAC ATCGGCCGGA CCTTCGAATG TGCCGGCCCG
CAGGTGCTGA CGCTGCGCGA ACTGGTGCAG CTGGCCGGGC GCTGGAGCGG CCACCCGCGC
CCGGTGCTGC CGCTGCCGGA ATGGGCCGGC CGCCTGCAGG CCGCCGCGCT GGGGTTGCTG
CCGGGCGAGC CGCTGATGTC GGGCGACAAC CTGGCGTCGA TGCGGGTACC CAATGTCGCC
GGCGGCCGCC TGCCGGGCCT GGCCGAACTC GGCATCCGCG CGGCCTCGCT GGCCGACGTG
ATGGGGCCCT GGCTCGGCGG CGGCGGCCAG CGCACCAATC AGCTGCGGAT GCTGGCAGGT
CGTTGA
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| Protein sequence | MNKVLVLGGT GFVGRAFAAA WVAAHGGTGA GLRIPSRRPA RAKALAMLPT VELVEADVHD
PAQLLALMAG CDAVVNLVAV LHGDARRFEQ VHVTLPQRIA GACAAAGVTR LVHVSALGVD
DAADAPPAPS LYLRSKTQGE QVLRAAPGLA LTLLRPSVIF GAEDRFINLF AALQALAPVM
PLAGAAARFQ PVWVDDVAHA IVACLTDPRH IGRTFECAGP QVLTLRELVQ LAGRWSGHPR
PVLPLPEWAG RLQAAALGLL PGEPLMSGDN LASMRVPNVA GGRLPGLAEL GIRAASLADV
MGPWLGGGGQ RTNQLRMLAG R
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