| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0108 |
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| Symbol | |
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| ID | 6162184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 110723 |
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| End bp | 112120 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641662852 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001789148 |
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| Protein GI | 171056799 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000558041 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAGAG CCATCCTGAT CATTGAAGAC GAGGCCACGC TGGCCCGCAA CCTGGCCATC
TATCTGGAAC GGCTGGGCGA CGAGGTGCGC GTGGCGGGCC GGGCCGAAGA AGGCCTGGCC
CTGCTCGAGA AGTTCCGCCC CGACATCGTC ATCCTCGACC ACAACCTGCC GGGCATGACC
GGGCTGGAGG CGCTGTCGCG CATCCGCGCC ATCGACGCCG ACGCCCAGGT GGTGATGGTC
ACCGGCTACG GCAGCACCGA GCTGGCGGTC GAGGCGATGA AGGCGGGAGC CGCCGATTTC
CTGACCAAGC CGCTGGTGCT GGGCGAACTC AAGCTGCTGC TCGAACGCCT GACCGAGCAG
GGCAAGCTCG CCAACACGGT CGACTACTAC GCCCAGCGCG ACGCCCAGGA CAGCGGGCTC
GACAAGATCG TCGGCGACTC CGAACCGATC CGCAACCTGC GCCAGATGCT GGTGTCGCTG
CTCGAGTCGG AGTCGCGGCT GGCCGATCGC GACCCGCCGG CGGTGCTGAT CGTCGGCGAG
ACCGGCACCG GCAAGGAGCT GGTGGCGCGC GCGCTGCACT ACGGCGGGCC GCGCCGCACC
GAGCCGTTCG TCGAGATCAA CTGCGGCGCC CTGCCCTCGC AGCTGATCGA GGCCGAGCTG
TTCGGCTACG AAAAAGGCGC CTTCACCGAC GCCCGCCAGC GCAAGGCCGG CCTGGTCGAG
ACCGCCGAAC ACGGCACGGT GTTCCTCGAC GAGATCGGCG AGACCGAGCT CGGCACGCAG
GTCAAGCTGC TCAAGCTGCT GGAAGAAAAA CGCATGCGCC GGCTCGGCGG CCTGCGCGAG
CAGCAGGTGC ACGCCCGCAT CATCAGCGCC ACCAACCGCC CGCTCGACCA GATGGTGCGC
GACGGGCGTT TTCGCGCCGA CCTGTTCTTC CGGCTGCGCA TCGTCGAGAT CCGGGTGCCG
CCGCTGCGCG AGCGTGGCCA CGACATCGTC ATGCTGGCCG AGCACTACCT CAACCTGCAC
GGCCAGCGTT ACCGCAAGGC CGGCCTGGTG CTGGGCGAAG AAGCCCGCCA GGCGCTGCTG
CAGTACAGCT GGCCCGGCAA CGTGCGCGAG CTGCGCAACG TGATGGAGCA GGCGGTGCTG
GTGGTCGAGG GCAGCGAGGT CGGCGTCCGC CACCTGCGCC TGACCGGCCC GGTCGGCCAC
GGCAGCGAAC TGCCGATCGA CGACAGCGAC CTGCACCTCG AGCGCATGGA GCGGCGGCTG
ATCCTGCGTG CGCTCGAGCG CACCCGGCAG AACGTCAGCG CCGCCGCGCG GCTGCTGGGC
GTGTCGCGCG ACACGCTGCG CTACCGGCTC GAGCGGCTCG AACTGCGCCC CGGCGAGTCC
GGCGACGCTC AGACCTGA
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| Protein sequence | MARAILIIED EATLARNLAI YLERLGDEVR VAGRAEEGLA LLEKFRPDIV ILDHNLPGMT
GLEALSRIRA IDADAQVVMV TGYGSTELAV EAMKAGAADF LTKPLVLGEL KLLLERLTEQ
GKLANTVDYY AQRDAQDSGL DKIVGDSEPI RNLRQMLVSL LESESRLADR DPPAVLIVGE
TGTGKELVAR ALHYGGPRRT EPFVEINCGA LPSQLIEAEL FGYEKGAFTD ARQRKAGLVE
TAEHGTVFLD EIGETELGTQ VKLLKLLEEK RMRRLGGLRE QQVHARIISA TNRPLDQMVR
DGRFRADLFF RLRIVEIRVP PLRERGHDIV MLAEHYLNLH GQRYRKAGLV LGEEARQALL
QYSWPGNVRE LRNVMEQAVL VVEGSEVGVR HLRLTGPVGH GSELPIDDSD LHLERMERRL
ILRALERTRQ NVSAAARLLG VSRDTLRYRL ERLELRPGES GDAQT
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