Gene Lcho_0101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0101 
Symbol 
ID6163516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp104905 
End bp105885 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content68% 
IMG OID641662845 
ProductC32 tRNA thiolase 
Protein accessionYP_001789141 
Protein GI171056792 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000472408 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACACCC CCACCGCCAC CCTGAACGCA CCGGCCGCGG ACGCCGAATC CGCCGCCGCC 
AGCGCCGCCG ACAAGAAGGC CGCCTTCGAG CTCAACAAGC TCAGCAAGCG GCTGCACCGC 
CAGGTCGGCC AGGCGATCAC CGACTTCAAC ATGATCCAGG AGGGCGACCG CGTGATGGTC 
TGCCTGTCGG GCGGCAAGGA CAGCTACGGC ATGCTCGACA TCCTGCTGGG CCTGCAGCAG 
CGCGCGCCGA TCACGTTCAG CATCGTGGCG GTCAACCTCG ACCAGAAGCA GCCCGGTTTC 
CCGGAGCACA TCCTGCCGGC CTACCTGAAG GCGCGCGGCG TCGAGTTCCA CATCGAGAAC 
CAGGACACCT ACAGCATCGT CAAGCGCGTG ATCCCCGAGG GCAAGACGAT GTGCAGCCTG 
TGCTCGCGTC TGCGCCGCGG CATCCTGTAC CGGGTGGCCG ACGAGCTGGG TGCGACCAAG 
ATCGCGCTGG GCCATCACCG CGACGACTTC CTCGGCACGG TGTTCCTCAA CATGTTCTTC 
GGCAGCAAGT TGAAGGGCAT GCCGCCCAAG CTGGTCAGCG ACGACGGCCG CCACACCGTG 
ATCCGCCCGC TCGCCTACGT GGCCGAGACC GACCTCGAGC GCTGGGCCGA ACATCGCGCG 
TTCCCGATCA TCCCGTGCAC GCTGTGCGGC ACGCAGGACA ACCTGCAGCG GGTGCAGATC 
AAGCACATGC TGCGCGACTG GGATCAGCGT TTTCCCGGTC GGATCGACAA CATGCATCGC 
GCGTTTTCAC AGGTGGTGCC CTCGCACCTG ATGGACCGCG CGCTGTTCCC CTTCGAGACC 
CTCGTGCCCA CCGGCGTGGC GGATCCGGCC GGCGACCGCG CCTTCGACGA GGACGACAGC 
GAGCTGTGCG CCCCGTCGGG CAGCGCCGAC GCGGCGGGCG ACGAGGTGAG CGTGCCGGTG 
GCGCTGATCC GCCGGGTGTG A
 
Protein sequence
MNTPTATLNA PAADAESAAA SAADKKAAFE LNKLSKRLHR QVGQAITDFN MIQEGDRVMV 
CLSGGKDSYG MLDILLGLQQ RAPITFSIVA VNLDQKQPGF PEHILPAYLK ARGVEFHIEN 
QDTYSIVKRV IPEGKTMCSL CSRLRRGILY RVADELGATK IALGHHRDDF LGTVFLNMFF 
GSKLKGMPPK LVSDDGRHTV IRPLAYVAET DLERWAEHRA FPIIPCTLCG TQDNLQRVQI 
KHMLRDWDQR FPGRIDNMHR AFSQVVPSHL MDRALFPFET LVPTGVADPA GDRAFDEDDS 
ELCAPSGSAD AAGDEVSVPV ALIRRV