Gene Lcho_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0100 
Symbol 
ID6161768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp104204 
End bp104854 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content74% 
IMG OID641662844 
Productputative lipoprotein 
Protein accessionYP_001789140 
Protein GI171056791 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00321337 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCGAT CGCCCCGACC CTCGCGCCCG CTGCCCAGCC GGCGCCGGCA TTTCCTGAAG 
GCCGCCGCCG CCGCTTCGGC CCTGTGGTGG CTGGCGGGCT GTGCGTCGAT CGACCAGGTC 
AGCGTCGACG TGACCACCTA CGGCGCCTGG CCGTCGGGCC GCGCGCCGGG CCGTTATGCG 
TTCGAGCGGC TGCCCTCGCA GGTGCAGGCC GGTGCGGCGC AGGACCAGCT GGAGGCGGCG 
GCCGGTGCGG CGCTGGAGCG GGTCGGTTTC AGCCGCGCCG CCGATGCGGC CCAGGCCGAC 
GTGCTGGTGC AGTTCGGTGC CCGCCAGGGC AAGCTGGTCG ATCCGCCGCC GATGTTCGGC 
TGGGGCATCG GCCTGGGTTT CCCGATCGGC GGGCGCAGCA GCATGGGGTT GGGCATGCAC 
ACCGGGTCGG GCTGGTACGG CGACCGGGTG CGCGACTACC GCGAGCTCGG CCTGCTGCTG 
CTCGACCGCG CCAGCCACCG GGTGCTGGTC GAGGTGCAGG CGCGCCACGA AAGCCGCTAC 
GGCGGTGACG ACCTGAGCGA GGCGCTGTTC GACGCCGCGT TGTCGGGCTT CCCCGCTTTG 
CCGGCCGGCG AACGCCGCGT CACGGTGCCT TTGCCGCCTG CTTCGCGCTG A
 
Protein sequence
MNRSPRPSRP LPSRRRHFLK AAAAASALWW LAGCASIDQV SVDVTTYGAW PSGRAPGRYA 
FERLPSQVQA GAAQDQLEAA AGAALERVGF SRAADAAQAD VLVQFGARQG KLVDPPPMFG 
WGIGLGFPIG GRSSMGLGMH TGSGWYGDRV RDYRELGLLL LDRASHRVLV EVQARHESRY 
GGDDLSEALF DAALSGFPAL PAGERRVTVP LPPASR