Gene Lcho_0096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0096 
Symbol 
ID6161764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp100889 
End bp101395 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content71% 
IMG OID641662840 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001789136 
Protein GI171056787 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00293139 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTTCAT CCATCCCGCT TGACGAGATC GACCTGCGTC TGCTCGACGA GTTGCAGCGC 
GATGCCTCGC GCTCGAACCA GGCGCTGGCC GAGGCGGTGC AGGTGTCACC CGCCACCAGC 
CTGCGCCGGC TGCGTCGCCT CGGCGAGGCC GGCGTGATCG AGCGCACCGT GGCCGTGCTG 
TCGCCCGAGG CGCTGGGTCA CGGCCTGACG GCGATCGTCG AGATCACGCT CGACGTGCAG 
GCCGCCGAGC GGCTGGCGGC GTTCGAGGCG CGGGTGGTGG CGGATGCGGG CGTGCAGCAG 
TGTTACCGCA CCAGCGGCGG GCCGGACTTC GTGCTGATCG CCCAGGTGGC CGACATGGCG 
GCCTATCAGG CGCTCGTGCA GCGGCTGTTC AATGCCGACG CCAACGTGCG CAACGTGCGC 
TGCTTCTTCA GCGTGCAGCG GGCCAAGTGC GGCCTGCAGA TCGCGCTGCC GGCCGCCGAC 
GTCACAGCGC CAGCCAGGCC AGCGTGA
 
Protein sequence
MTSSIPLDEI DLRLLDELQR DASRSNQALA EAVQVSPATS LRRLRRLGEA GVIERTVAVL 
SPEALGHGLT AIVEITLDVQ AAERLAAFEA RVVADAGVQQ CYRTSGGPDF VLIAQVADMA 
AYQALVQRLF NADANVRNVR CFFSVQRAKC GLQIALPAAD VTAPARPA