| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0079 |
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| Symbol | |
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| ID | 6159727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 80583 |
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| End bp | 82283 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641662823 |
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| Product | malonate decarboxylase, alpha subunit |
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| Protein accession | YP_001789119 |
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| Protein GI | 171056770 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
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| TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.283952 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCG TTGCCACCTC GCCCGCCGCT GCGGCAGCCA CCACCACCGC CTGGGATCAC
AAGGCGCGCC GCCGCCAGGC CCGCCTGGCG CGCGCGGCCG AAGAGGTAGC CGCGCGTGGC
AAGTGCGTGC CGCATGCCGA CGCCGTGGCG CTGCTGCACG CCGTGCTCGA ACCCGGCGAC
CGCGTCTGCC TGGAAGGCAA CAACCAGAAG CAGGCCGACT TCCTGGCCCG CGCGCTGACG
CAGCTCGACC CGCAGCGGGT GCACGACCTG CACATGGTGC AGTCGGTGCT GGCGCTGCCC
GAACACCTCG ACCTGTTCGA GGACGGCATC GCCAGCCGGC TCGACTTCTC GTTCTCGGGC
CCGCAGGGCG CGCGGCTGGC GCAGCTGGTG TCAGCCGGCC AGATCCGCAT CGGCGCGATC
CACACCTACC TCGAACTGTT CGCGCGCTAC TTCGTCGACC TGACGCCGCA GGTGGCGCTG
ATCGCCGCGC AGTCGGCCGA CCGCGAGGGC AACCTCTACA CCGGCCCCAA CACCGAGGAC
ACGCCGGCGA TCGTCGAGGC CACCGCGTTC AGCGGCGGCA TCGTGATCGC GCAGGTGAAT
CAGATCGTGG ATCGGTTGCC GCGGATCGAC GTGCCGGCCG GCTGGGTCGA CTTCGTGATC
GAGGCGCCGA CGCCGCATTT CATCGAGCCG CTGTTCACCC GCGACCCGGC GCAGATCAGC
GAGATCCAGG TGCTGATGGC CATGATGGCG ATCAAGGGCA TCTACGCCGA ATACGGCGTG
CAGCGCCTGA ACCACGGCAT CGGCTTCGAC ACCGCGGCGA TCGAACTGCT GCTGCCGACC
TACGGCGAAT CGCTCGGCCT CAAAGGCAAG ATCTGCCGCC ACTGGGCGCT CAATCCGCAC
CCGGCGCTGA TCCCGGCGAT CGAGGCGGGC TGGGTCGAGT CGATCCACTC GTTCGGCTCC
GAGCTCGGCA TGGAGGACTA CATCCGCGCC CGCTCCGACG TCTTCTTCAC CGGCGCCGAC
GGCTCGCTGC GCAGCAACCG CGCCTTCTGC CAGGCGGCCG GCCACTATGC CTGCGACCTG
TTCATCGGCT CGACGCTGCA GATGGACCTG GCCGGCAACA GCTCGACCGC AACGCTCGGC
CGCATCGCCG GTTTCGGCGG CGCGCCCAAC ATGGGCGCCG ACGCGCGCGG CCGGCGCCAC
GCCAGCCCAG CCTGGCTGAA GGCCGGCGCG CAGGCCCGCG AAGGGCTCAC CGGTGCGCGC
GGCACACCAC GTGGCCAGAA GCTGGTGGTG CAGATGGTCG AGACCTTCCG CGAGCACATG
CAGCCGGCTT TCGTCGAGCG GCTCGATGCC TGGCAGCTCG CCGAGCAGGC CGGCATGGCG
CTGCCGCCGA TCATGATCTA CGGCGACGAC GTCAGCCACG TGCTGACCGA AGAAGGCATC
GCCAACCTGC TGCTGTGCCG CAGCGACGAG GAGCGCGAGC AGGCGATCCG CGGTGTCGCC
GGCTACACGC CGCTGGGCCT GGGCCGCGAC CGCCGCGCGG TCGAGAACCT GCGCGACCGC
GGCGTGATCC GCCGCCCGGC CGACCTCGGC ATCGACCCGC GCGACGCCAC CCGCAACCTG
CTGGCCGCAC GCTCGATGCG CGACCTGGTG CGCGCCTCCG GCGGGCTCTA TCAACCGCCC
AAACGGTTCA GGAACTGGTG A
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| Protein sequence | MNAVATSPAA AAATTTAWDH KARRRQARLA RAAEEVAARG KCVPHADAVA LLHAVLEPGD
RVCLEGNNQK QADFLARALT QLDPQRVHDL HMVQSVLALP EHLDLFEDGI ASRLDFSFSG
PQGARLAQLV SAGQIRIGAI HTYLELFARY FVDLTPQVAL IAAQSADREG NLYTGPNTED
TPAIVEATAF SGGIVIAQVN QIVDRLPRID VPAGWVDFVI EAPTPHFIEP LFTRDPAQIS
EIQVLMAMMA IKGIYAEYGV QRLNHGIGFD TAAIELLLPT YGESLGLKGK ICRHWALNPH
PALIPAIEAG WVESIHSFGS ELGMEDYIRA RSDVFFTGAD GSLRSNRAFC QAAGHYACDL
FIGSTLQMDL AGNSSTATLG RIAGFGGAPN MGADARGRRH ASPAWLKAGA QAREGLTGAR
GTPRGQKLVV QMVETFREHM QPAFVERLDA WQLAEQAGMA LPPIMIYGDD VSHVLTEEGI
ANLLLCRSDE EREQAIRGVA GYTPLGLGRD RRAVENLRDR GVIRRPADLG IDPRDATRNL
LAARSMRDLV RASGGLYQPP KRFRNW
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