| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0073 |
|---|
| Symbol | |
|---|
| ID | 6160297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 76003 |
|---|
| End bp | 76926 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641662817 |
|---|
| Product | Acyl transferase |
|---|
| Protein accession | YP_001789113 |
|---|
| Protein GI | 171056764 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0331] (acyl-carrier-protein) S-malonyltransferase |
|---|
| TIGRFAM ID | [TIGR03131] malonate decarboxylase, epsilon subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGG GCCTGCTGTT CCCCGGCCAG GGCACGCAAC ACCCCGACAT GCTGCCGTGG
CTGGGACACG GCTGCGCGCC GCTGCCCGCG CTGGCACTGC TGGAATCCCG GCTCGGCGCC
GACTGGCGCA ACCGCCTGGC CGACAGCGCC TGGGCCACCC GCAACGAGGT GGCGCAGACG
CTGCTCACCG GCCTCAGCCT GGCGGCCTGG CAGCAGCTGC AGCCGCTGTT GCCCGCGCCG
GCGGTGGTGG CGGGTTACAG CGTCGGCGAG CTGGCGGCGT TCAGCGCGGC GGGCGTGTTC
GGTGCCGACG ACGCGCTGGC GATGGCGTCG TTGCGGGCGC GGCTGATGGA CGAGTGCGTG
CAAGGCCAGC CCACCGGCCT GCTGTCGATC AGCGGCGCGG CACCCGGAGC GATCGACGAC
CTGTGCCGCC GGCACGCGCT GGCGGTGGCG ATCCGCATCG GCGCCGATCG CGTCATCGTC
GGTGGCTTGC GCAGCGATTT GCAAGCCGCC GAAGACGAAG CCGGCGCGGC CGGCGCCAGC
TGCACGCGCC TGGCCGTGAG CATCGCCTCG CACACGCCGT GGATGGCCGC CGGCGTGCCT
CGGCTGGCCG AGGCGCTGGC GGCGCGGCCC TTCGAGCGCC CGCGTGTGGC GCTGGTCTGC
AACCACACCG GCACGACGCT GCGCACGGTC GACGCACTGC GCCAGGCGCT GGCCGCGCAG
ATCGCCGCCA CCGTGCCGTG GGACCGCTGC ATGGACACGG TGGCCGAGCG GCGGGTGCGC
TGCGTGCTCG AAGTCGGCCC GGGCAACACG CTGGCGCGGA TGTGGAACGC CCGCCACCCG
GCGATACCGG CGCGCTCGGT GGACGAGTTC CAGGCGCCGG ACGCGGCTGC GCGCTGGGTG
CACGAGGCGC TCGGCACCGA CTGA
|
|---|
| Protein sequence | MTLGLLFPGQ GTQHPDMLPW LGHGCAPLPA LALLESRLGA DWRNRLADSA WATRNEVAQT
LLTGLSLAAW QQLQPLLPAP AVVAGYSVGE LAAFSAAGVF GADDALAMAS LRARLMDECV
QGQPTGLLSI SGAAPGAIDD LCRRHALAVA IRIGADRVIV GGLRSDLQAA EDEAGAAGAS
CTRLAVSIAS HTPWMAAGVP RLAEALAARP FERPRVALVC NHTGTTLRTV DALRQALAAQ
IAATVPWDRC MDTVAERRVR CVLEVGPGNT LARMWNARHP AIPARSVDEF QAPDAAARWV
HEALGTD
|
|---|
| |