Gene Lcho_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0055 
Symbol 
ID6160002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp59309 
End bp61462 
Gene Length2154 bp 
Protein Length717 aa 
Translation table11 
GC content72% 
IMG OID641662799 
Productsensor protein 
Protein accessionYP_001789095 
Protein GI171056746 
COG category[T] Signal transduction mechanisms 
COG ID[COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.782355 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTGAAG TGCCACCGCA CAAGCCGTCG CGCGGGCGCC TGTTCCGCCA GTACGCGCTG 
CTCATCAACG CGCTGGTCGG CACCCTGCTG CTGGCGAGTG CGGTGCTGAG CCTGACGTTC
TCGTACCGCG AGAGCCGCGA CCACCTGGTG GCGCTGCAGT TCGAGCAGGC GCAGGGCGCG
GCGGCGCGCA TCGAGCAATA CATCGCCGGC ATCGAGCAGC AGATCGGCTG GACCGCGCTG
TCGGGCATGA ACGCCGGCGC CGATCCGCTG GAGGCGCGCC GCATCGACTC CCTCAAGCTG
CTGCGCCAGG TGCCGGCGAT CACCGAAGTG GCGTGGCTCG ACGCGCAGGG CCGCGAGCAG
CTGCGGGTGT CGCGCCTGGC GCTGGACACG CAGGACCAGG GGCTCGACCG CTCGGCCGAG
CCGCTGTTCA CCGAGCCGGC GGCCGGGCGC GTGTGGCGCG GGCCGGTGTC GTTTCGCAAG
CAGACCGAGC CCTACATGAC GATCGCCCGC CGCGCCGGGC CGGGCCGCAG TGGCGGCGTG
ACGGTGGTGG AGGTCAACCT GAAGTTCGTC TGGGACGTGG TGGCGCGCAT CCGCCCCGGC
CACCCCGACG GCGGCGGACT GGCCTATGCG GTCGACCAGA GTGGCGCGCT GATCGCCCAC
CCGGACATCA GCCTGGTGCT CAAGCAGACC AACCTGCGCG CGCTGCCGCA GGTGGCGGCC
AGCTTGGCGG CGGACGCGAT CGACCGCCCG CCCGGCCCTG CACACGTGGC CGACGCCGCG
GGCGGCGTGG CGGTCGAAGA CGCGCAGGAC CTGGCCGGCC AGCCGGTGCT GTCGGCCTAT
GCGCGGCTGG AGCCGCTGGG CTGGCGGGTG TTCGTCGAGT CGCCGCGCTC GCAGACGCTG
GCGCCGGTCT ATGCCAGCCT GCAGCGCCTG GGCCTGCTGC TGGCAGCAGG GCTGGTGATT
TCGATGATGG CCAGCGCCTG GCTGGCGCGC ACGCTGGTGC GGCCCATCCG GCAGCTGCAG
GACGGCGCAG CGCGCTTGGC CGCAGGCGAC CTCGACCACC GGCTGACCGT GGCGACCCAT
GACGAGCTGG AAGACCTCGC CGGCGAATTC AACCGCATGG CCGGCGAGCT GAAGGGATCG
TACGAAGGCC TCGAACGCAA GGTCAGGGAA CACACGGCCG AGTTGGCCGA GGCGCTGGCG
CGGCAGACCG CCACGGCCGA GGTGCTGCAG GTGATCGGGC GGTCCGTGGC GGACGCGGGG
CCGGTGTTCG CCAAGATCCT GGAAAGCTGC GAGCAGTTGA TTCCCGACAC CGTGGCGTCG
CTGCTGGACC TGGTGGACGG CGACCGGATC GTGCTGGCCG ATTTCCGCAT GCGTGTCACC
GACAACGCCA CCGCAGAAGT GCGCGCAGCG CGCGACCGGC GGGTGCGCGC CGGCTACCCG
CATCCGCTGC GTGGATCGGC CACCGAGGCG GCACTCGACG CAGGCCGGGT GGTCGAGTTC
AGCGACACGC TGAACGGGCC CGACACGCCG CCACAAACCC GCGAATTCGC CCTCAGCGCG
GGCTACCCTT TCTCGCTGAT GGTCGCGCCG ATGCGATGGG AAGGGCGCCC GATCGGCAGC
ATCGGCGTGG TCCGCTACAC CCTCGTGCCA TTCAGGCCCA AGGAGCGGGA ACTGCTGCAG
ACCTTTGCCG ATCAGGCCGC GATCGCGATC CAGAACGCGC GCCTGTTCAC CGAGACCCGC
GAGGCCCTGG AGCAGCGCAC CGCCACCACC GAGGTGCTGC AGGCCATCAG CCGCTCGGTG
GCCGATCCGC AACCGGTGTT CGAGAAGATC CTCGATCACT GCGAGCGCCT GTTCGGCAGC
GACCAGCCCG GCATCTTCCT GGTCGACGAC GAGGGCCAGC TGCGGGTGGG CGCTTTCCGC
GGCCCCGACC GGGCGCGCGT GCTGGCCAGC TACCCCAAGC CGCTCGGCGA CACGCTCAGC
GCGGTGGCGA TCCGCGCGCA CCGCCCGGTC GAGCTGGCCG ACGTGCTGGC CGACCCCGCC
GCGCCGGCCT ACCTGCGCAC GCTGGCCGAG CAGACCGGCA ACTTTGCGGT GATGGTGGCG
CCGCTGATCC ACGCCGAGCG GGCGATCGGC TCGATCGTGG TGACACGCCG CTGA
 
Protein sequence
MPEVPPHKPS RGRLFRQYAL LINALVGTLL LASAVLSLTF SYRESRDHLV ALQFEQAQGA 
AARIEQYIAG IEQQIGWTAL SGMNAGADPL EARRIDSLKL LRQVPAITEV AWLDAQGREQ
LRVSRLALDT QDQGLDRSAE PLFTEPAAGR VWRGPVSFRK QTEPYMTIAR RAGPGRSGGV
TVVEVNLKFV WDVVARIRPG HPDGGGLAYA VDQSGALIAH PDISLVLKQT NLRALPQVAA
SLAADAIDRP PGPAHVADAA GGVAVEDAQD LAGQPVLSAY ARLEPLGWRV FVESPRSQTL
APVYASLQRL GLLLAAGLVI SMMASAWLAR TLVRPIRQLQ DGAARLAAGD LDHRLTVATH
DELEDLAGEF NRMAGELKGS YEGLERKVRE HTAELAEALA RQTATAEVLQ VIGRSVADAG
PVFAKILESC EQLIPDTVAS LLDLVDGDRI VLADFRMRVT DNATAEVRAA RDRRVRAGYP
HPLRGSATEA ALDAGRVVEF SDTLNGPDTP PQTREFALSA GYPFSLMVAP MRWEGRPIGS
IGVVRYTLVP FRPKERELLQ TFADQAAIAI QNARLFTETR EALEQRTATT EVLQAISRSV
ADPQPVFEKI LDHCERLFGS DQPGIFLVDD EGQLRVGAFR GPDRARVLAS YPKPLGDTLS
AVAIRAHRPV ELADVLADPA APAYLRTLAE QTGNFAVMVA PLIHAERAIG SIVVTRR