Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0055 |
Symbol | |
ID | 6160002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 59309 |
End bp | 61462 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641662799 |
Product | sensor protein |
Protein accession | YP_001789095 |
Protein GI | 171056746 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.782355 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTGAAG TGCCACCGCA CAAGCCGTCG CGCGGGCGCC TGTTCCGCCA GTACGCGCTG CTCATCAACG CGCTGGTCGG CACCCTGCTG CTGGCGAGTG CGGTGCTGAG CCTGACGTTC TCGTACCGCG AGAGCCGCGA CCACCTGGTG GCGCTGCAGT TCGAGCAGGC GCAGGGCGCG GCGGCGCGCA TCGAGCAATA CATCGCCGGC ATCGAGCAGC AGATCGGCTG GACCGCGCTG TCGGGCATGA ACGCCGGCGC CGATCCGCTG GAGGCGCGCC GCATCGACTC CCTCAAGCTG CTGCGCCAGG TGCCGGCGAT CACCGAAGTG GCGTGGCTCG ACGCGCAGGG CCGCGAGCAG CTGCGGGTGT CGCGCCTGGC GCTGGACACG CAGGACCAGG GGCTCGACCG CTCGGCCGAG CCGCTGTTCA CCGAGCCGGC GGCCGGGCGC GTGTGGCGCG GGCCGGTGTC GTTTCGCAAG CAGACCGAGC CCTACATGAC GATCGCCCGC CGCGCCGGGC CGGGCCGCAG TGGCGGCGTG ACGGTGGTGG AGGTCAACCT GAAGTTCGTC TGGGACGTGG TGGCGCGCAT CCGCCCCGGC CACCCCGACG GCGGCGGACT GGCCTATGCG GTCGACCAGA GTGGCGCGCT GATCGCCCAC CCGGACATCA GCCTGGTGCT CAAGCAGACC AACCTGCGCG CGCTGCCGCA GGTGGCGGCC AGCTTGGCGG CGGACGCGAT CGACCGCCCG CCCGGCCCTG CACACGTGGC CGACGCCGCG GGCGGCGTGG CGGTCGAAGA CGCGCAGGAC CTGGCCGGCC AGCCGGTGCT GTCGGCCTAT GCGCGGCTGG AGCCGCTGGG CTGGCGGGTG TTCGTCGAGT CGCCGCGCTC GCAGACGCTG GCGCCGGTCT ATGCCAGCCT GCAGCGCCTG GGCCTGCTGC TGGCAGCAGG GCTGGTGATT TCGATGATGG CCAGCGCCTG GCTGGCGCGC ACGCTGGTGC GGCCCATCCG GCAGCTGCAG GACGGCGCAG CGCGCTTGGC CGCAGGCGAC CTCGACCACC GGCTGACCGT GGCGACCCAT GACGAGCTGG AAGACCTCGC CGGCGAATTC AACCGCATGG CCGGCGAGCT GAAGGGATCG TACGAAGGCC TCGAACGCAA GGTCAGGGAA CACACGGCCG AGTTGGCCGA GGCGCTGGCG CGGCAGACCG CCACGGCCGA GGTGCTGCAG GTGATCGGGC GGTCCGTGGC GGACGCGGGG CCGGTGTTCG CCAAGATCCT GGAAAGCTGC GAGCAGTTGA TTCCCGACAC CGTGGCGTCG CTGCTGGACC TGGTGGACGG CGACCGGATC GTGCTGGCCG ATTTCCGCAT GCGTGTCACC GACAACGCCA CCGCAGAAGT GCGCGCAGCG CGCGACCGGC GGGTGCGCGC CGGCTACCCG CATCCGCTGC GTGGATCGGC CACCGAGGCG GCACTCGACG CAGGCCGGGT GGTCGAGTTC AGCGACACGC TGAACGGGCC CGACACGCCG CCACAAACCC GCGAATTCGC CCTCAGCGCG GGCTACCCTT TCTCGCTGAT GGTCGCGCCG ATGCGATGGG AAGGGCGCCC GATCGGCAGC ATCGGCGTGG TCCGCTACAC CCTCGTGCCA TTCAGGCCCA AGGAGCGGGA ACTGCTGCAG ACCTTTGCCG ATCAGGCCGC GATCGCGATC CAGAACGCGC GCCTGTTCAC CGAGACCCGC GAGGCCCTGG AGCAGCGCAC CGCCACCACC GAGGTGCTGC AGGCCATCAG CCGCTCGGTG GCCGATCCGC AACCGGTGTT CGAGAAGATC CTCGATCACT GCGAGCGCCT GTTCGGCAGC GACCAGCCCG GCATCTTCCT GGTCGACGAC GAGGGCCAGC TGCGGGTGGG CGCTTTCCGC GGCCCCGACC GGGCGCGCGT GCTGGCCAGC TACCCCAAGC CGCTCGGCGA CACGCTCAGC GCGGTGGCGA TCCGCGCGCA CCGCCCGGTC GAGCTGGCCG ACGTGCTGGC CGACCCCGCC GCGCCGGCCT ACCTGCGCAC GCTGGCCGAG CAGACCGGCA ACTTTGCGGT GATGGTGGCG CCGCTGATCC ACGCCGAGCG GGCGATCGGC TCGATCGTGG TGACACGCCG CTGA
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Protein sequence | MPEVPPHKPS RGRLFRQYAL LINALVGTLL LASAVLSLTF SYRESRDHLV ALQFEQAQGA AARIEQYIAG IEQQIGWTAL SGMNAGADPL EARRIDSLKL LRQVPAITEV AWLDAQGREQ LRVSRLALDT QDQGLDRSAE PLFTEPAAGR VWRGPVSFRK QTEPYMTIAR RAGPGRSGGV TVVEVNLKFV WDVVARIRPG HPDGGGLAYA VDQSGALIAH PDISLVLKQT NLRALPQVAA SLAADAIDRP PGPAHVADAA GGVAVEDAQD LAGQPVLSAY ARLEPLGWRV FVESPRSQTL APVYASLQRL GLLLAAGLVI SMMASAWLAR TLVRPIRQLQ DGAARLAAGD LDHRLTVATH DELEDLAGEF NRMAGELKGS YEGLERKVRE HTAELAEALA RQTATAEVLQ VIGRSVADAG PVFAKILESC EQLIPDTVAS LLDLVDGDRI VLADFRMRVT DNATAEVRAA RDRRVRAGYP HPLRGSATEA ALDAGRVVEF SDTLNGPDTP PQTREFALSA GYPFSLMVAP MRWEGRPIGS IGVVRYTLVP FRPKERELLQ TFADQAAIAI QNARLFTETR EALEQRTATT EVLQAISRSV ADPQPVFEKI LDHCERLFGS DQPGIFLVDD EGQLRVGAFR GPDRARVLAS YPKPLGDTLS AVAIRAHRPV ELADVLADPA APAYLRTLAE QTGNFAVMVA PLIHAERAIG SIVVTRR
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