Gene Lcho_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0048 
Symbol 
ID6159820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp52932 
End bp53558 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content73% 
IMG OID641662792 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001789088 
Protein GI171056739 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGGC GCGCCTTGTA TCGGCCCCTC GCGCTCGGCG CGTGGCTGGC CGCGTGTGGC 
CTGTTCGGGC CGCTGCGCAC CCTGGCGCAT GGCAGCACCG GTGCGCCGGC GCACGACGAT 
GCCGATGAAC GCCTGCCGCA GCTCGGTCCG GCGACACCGT TCTCGCTGAT CGACCAGTCC 
GGCCAGCGCC TCGCCCTGGC CGAGCTGCGC GGCAAGGTGG TGGTGCTGAC CTTCATCTTC 
ACCACCTGCA CCGACACCTG TCCGATCCTG ACCGCCCGGC TGGCCGCGCT GCAGGCGCCG 
CTGGGCGCCG CCTTCGGGCC ACGGCTGCGC TTCGTCTCGA TCAGCGTCGA ACCCGAGGTC 
GATACCCCCG AGGTGCTGCA CGCCTACGCC CGCACGCATG GCGCCGATCT GCGCGGCTGG 
AGTTTTCTCA CCGGCCGGGC CGGCGCGGTG CAGGCCGCCG TGCGCGGCTA CGGCAGCTAC 
GCACGACGGC GCGGCACCGG CGAGATCGAC CACCTGACGC TGACCTCGCT GATCGACCGC 
CGGGGCCGCC TGCGGGTGCA GTACCTGGGC ACACGGTTTC GCGACGACGA GATGCTGCGC 
GACCTGCACG CGCTGCTGGC CGAATGA
 
Protein sequence
MRRRALYRPL ALGAWLAACG LFGPLRTLAH GSTGAPAHDD ADERLPQLGP ATPFSLIDQS 
GQRLALAELR GKVVVLTFIF TTCTDTCPIL TARLAALQAP LGAAFGPRLR FVSISVEPEV 
DTPEVLHAYA RTHGADLRGW SFLTGRAGAV QAAVRGYGSY ARRRGTGEID HLTLTSLIDR 
RGRLRVQYLG TRFRDDEMLR DLHALLAE