Gene Lcho_0042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0042 
Symbol 
ID6160066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp47049 
End bp47597 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content70% 
IMG OID641662786 
ProductLipocalin family protein 
Protein accessionYP_001789082 
Protein GI171056733 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3040] Bacterial lipocalin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.724852 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCGAC ACCACCGTCT CACCCTCTGC GCGCTGTCCG CTCTGACCGC CCTGGCGGTG 
CTCGCCGGCT GCAGCACCAC GCCGACGGCG CCACTTCCGA CCGTCGCCAC CGTCGACCTC
GCCCGCTACG CCGGCGGCTG GTACGAGATC AGCGCGCTGC CGAACCGCTT TCAGGCGATG
TGCGTGGCCG ACACGAAGGC GCATTACCGC GCGATCGGCG ATGACATCGA GGTCATCAAC
CGCTGTCGCC AGGCCGACGG CAGCGTCACC CGCGCGACCG GCATCGCCAA GGTGGTGGCC
GACAGCGGCA ACGCCAAGCT GCGGGTGAGC TTCTTCCGGC CGTTCTACGG CAACTACTGG
GTGCTGGCGC TCGACCCCGA CTACCGCTGG GTGCTGGTGG GCGAGCCGAA ACGGCGCTTC
GGCTGGGTGC TGTCGCGCAC GCCGCAGATG GCGCCGGCCG ATCTGGACGC GGCGCTGCAG
CGCGCGGTCG AGCGGGGCTA TGCCCGCGCC GATTTCAAGC CCACGCCACA GAGTCAGCCG
CTCGACTGA
 
Protein sequence
MPRHHRLTLC ALSALTALAV LAGCSTTPTA PLPTVATVDL ARYAGGWYEI SALPNRFQAM 
CVADTKAHYR AIGDDIEVIN RCRQADGSVT RATGIAKVVA DSGNAKLRVS FFRPFYGNYW
VLALDPDYRW VLVGEPKRRF GWVLSRTPQM APADLDAALQ RAVERGYARA DFKPTPQSQP
LD