Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0042 |
Symbol | |
ID | 6160066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 47049 |
End bp | 47597 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641662786 |
Product | Lipocalin family protein |
Protein accession | YP_001789082 |
Protein GI | 171056733 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3040] Bacterial lipocalin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.724852 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCGAC ACCACCGTCT CACCCTCTGC GCGCTGTCCG CTCTGACCGC CCTGGCGGTG CTCGCCGGCT GCAGCACCAC GCCGACGGCG CCACTTCCGA CCGTCGCCAC CGTCGACCTC GCCCGCTACG CCGGCGGCTG GTACGAGATC AGCGCGCTGC CGAACCGCTT TCAGGCGATG TGCGTGGCCG ACACGAAGGC GCATTACCGC GCGATCGGCG ATGACATCGA GGTCATCAAC CGCTGTCGCC AGGCCGACGG CAGCGTCACC CGCGCGACCG GCATCGCCAA GGTGGTGGCC GACAGCGGCA ACGCCAAGCT GCGGGTGAGC TTCTTCCGGC CGTTCTACGG CAACTACTGG GTGCTGGCGC TCGACCCCGA CTACCGCTGG GTGCTGGTGG GCGAGCCGAA ACGGCGCTTC GGCTGGGTGC TGTCGCGCAC GCCGCAGATG GCGCCGGCCG ATCTGGACGC GGCGCTGCAG CGCGCGGTCG AGCGGGGCTA TGCCCGCGCC GATTTCAAGC CCACGCCACA GAGTCAGCCG CTCGACTGA
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Protein sequence | MPRHHRLTLC ALSALTALAV LAGCSTTPTA PLPTVATVDL ARYAGGWYEI SALPNRFQAM CVADTKAHYR AIGDDIEVIN RCRQADGSVT RATGIAKVVA DSGNAKLRVS FFRPFYGNYW VLALDPDYRW VLVGEPKRRF GWVLSRTPQM APADLDAALQ RAVERGYARA DFKPTPQSQP LD
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