| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0025 |
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| Symbol | |
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| ID | 6159815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 30457 |
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| End bp | 31902 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641662770 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001789066 |
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| Protein GI | 171056717 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.17702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCACG GAACCACTGC CCCGAAGACG CCGCTGCGCC TGCAGATCTA CCGGCAGTTG
CGTGCGGCCA TCGAGCAGGG CAGCTTTGCA GCGGGCGCGC GCCTGCCACC TACCCGCGAA
CACGCGCTGG CCCTGGGCGT GGCGCGCAAC ACCGTGCTGT GGGCGATGGA GCGGCTGCGC
GCCGAGGGTT ACGTGATCAC CCGCGTCGGC GACGGCAGTT ATGTGGCGGG CGATCTCGCC
GCGCTGGGTC GGCCGGTGTC GCGGGGGTCA CAGGGTTCGG CCATGGCGCC GGCCTTGTCG
CGCCGCGGCC AGCTGATCGC CGACACCGCC TTGCGCTGGC AGCCGCCGCT GCAGCCGGCG
CAGGCCTTTC GCATCGGCGC ACCCGAGATC GCCACCTTTC CCTTCGCGCT GTGGGATCGG
CTGGCGCGCC AAGCCAGCCC GCGGCAGCGC CTGGCCCAGG CGCAATACCT CGATCCGGCC
GGCCTGCCGG CGCTGCGCGA GGCGATCGCG CAGTGGCTGT GGGTGTCGCG TGGCATCCGC
TGCGAGGCCG CCCAGGTGCT GGTGTGCGCG GGTTCGCAGC AGGCGCTCGA CCTGATCGGC
CGGCTGCTGC TCGACCCCGC CGACGAGGTG CTGGTCGAAG ACCCCGGCTA CCCCGGCATC
CGCGCCAGCC TGCTCGGCCA CGGCGCCACC GTGCGGCCGG TGCCGCTGGA CGGCGAGGGC
ATCGACATCG CCCACGCCGC GGCCCGCTGG CCGGCGGCTC GGTTGGCGGT GGTGACCCCC
ACGCACCAGT TCCCGACCGG CGTGCGCATG AGCCTGAAGC GCCGGCTGCT GCTGCTCGAC
TGGGCCCGCG CACACGACGC CTGGATCGTC GAGGACGACT ACGACGGCGA GTTCCAGTAC
GGCGCCCACC GCATCCCGGC GCTGTGCAGC CTGCCGCAGG CCGGGCGGGT GCTCTACGTC
GGCACCTTCT CGAAGACGCT GCACCCGGGG CTGCGGCTGG GTTTCATCGT GCTGCCGCAT
GCGCTGGCCC CCACCTTTGC CAGCGCGCGG GCGCTGACCG ACCGCCACGC CCCGGGCGAC
GCGCAGGACG TGCTGGCGCG TTTCATCCTC GAAGGCCATC TGCTGCGCCA CCTGCAGCGC
ATGCGTGCGC TCTACCCGCA ACGCCAGCGC GTGCTGATCG AGGCGCTGGC CCAGGCCAGC
GGCGGCGCGC TGCAGCTCAG GCCCAGCGAA CAGGGCATGC ACCTGCTGCA CGAGCTGCCA
CCCGGTCAGG CCGATGCGCC GCTGGCCGCC CGCGCCGGCG CAGCCGGGGT CTACCTGGCG
CCGCTGTCGC GCTACACCGT CGAGTCACCG CGGCGCGGCT GGCTGTTCGG CTACGCCGCC
TACGACACCG ACGCCCTGCA GACCGCGGCA GCCATCGTCG GTGCGCTGCT GATGCCGCGT
CGCTGA
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| Protein sequence | MPHGTTAPKT PLRLQIYRQL RAAIEQGSFA AGARLPPTRE HALALGVARN TVLWAMERLR
AEGYVITRVG DGSYVAGDLA ALGRPVSRGS QGSAMAPALS RRGQLIADTA LRWQPPLQPA
QAFRIGAPEI ATFPFALWDR LARQASPRQR LAQAQYLDPA GLPALREAIA QWLWVSRGIR
CEAAQVLVCA GSQQALDLIG RLLLDPADEV LVEDPGYPGI RASLLGHGAT VRPVPLDGEG
IDIAHAAARW PAARLAVVTP THQFPTGVRM SLKRRLLLLD WARAHDAWIV EDDYDGEFQY
GAHRIPALCS LPQAGRVLYV GTFSKTLHPG LRLGFIVLPH ALAPTFASAR ALTDRHAPGD
AQDVLARFIL EGHLLRHLQR MRALYPQRQR VLIEALAQAS GGALQLRPSE QGMHLLHELP
PGQADAPLAA RAGAAGVYLA PLSRYTVESP RRGWLFGYAA YDTDALQTAA AIVGALLMPR
R
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