| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0022 |
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| Symbol | |
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| ID | 6159940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 27524 |
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| End bp | 28894 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641662767 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001789063 |
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| Protein GI | 171056714 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4267] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.120059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGCA TCGGTTTCGA GCTGCGCCGC CTGCTCAAGC GCGACAGCTA CGCCGGTCTG
TTCCAGGCCT ACACCTACGC GGGCATCATC AGCTCGGGGC CGTGGGTGCT GTCGATCATG
GCGATCCTGT TCATCGGCGT GCTGTCGGGG CTGGTGGTGT CGCCGGCCGG GCAGATCAGC
GAGTTCCAGG TGGCCGTGAC CTGGCTGGTG ATGCTGTCGC TGATCCTCAC CGGGCCGATC
CAGCTGTCGT TCACCCGCTG GATCGCCGAC CGCCTGTTCG AGCACAAGGA CGCCCTGATC
GCGCCCAACT TCGTCGGCGT GCTGCTGGTC GTGGTGCTGG CGTCGGGCGT GCTCGGCCAG
GCGCTGGTGC CACCGCTGTT CCCGGACCAG TCCAACCTGT TCCGCGCCAC CTTCAGCTGC
GCGCTGGTGG TGCTCAGCTG CATCTGGGTG GCGACGATCT TCCTGTCGGG CCTCAAGCAG
TACAAGACCA TCGTCGCGAT GTTCGCGCTC GGCTACGGGC TGACGGTGGT GGCGGCGCTG
GCGTTGCGCC ACTACGGCCT CGAGGGTCTG CTGATGGGCT TCCTGATCGG CCAGTGCGTG
CTGCTGGGCG GCATGCTGGT GCTGATCCTG CGCACGCTGC CGTCGCTGCG GCTGATCGCC
TTCGACTTCC TGCGCCCGGG TGCGATGTAC GTCGAGCTGG TCTGGGTCGG GCTGTTCTTC
AACCTCGGCG TCTGGGCCGA CAAGCTGGTG TTCTGGTTTT CGCCCGAGGT CAGCGAAAGC
ATCATCGGCC CGCTGCGCGC CTCGGTGATC TACGACCTGC CGAGCTTCCT CGCCTACCTG
TCGATCATCC CGGGCATGGC GGTGTTCCTG GTGCGCATCG AGACCGATTT CGTCGAGTAC
TACGACCGCT TCTACAACGC GGTGCGCGAG GGCGGCTCGC TCGATCACAT CCAGCACATG
CGCAACCAGA TGGTGTTCAC GATCCGCCAG GGGCTCTACG AGATCCTGAA GATCCAGGGC
ATCACCGTGC TGCTGGTGAT CGTGGCCGGG CCGGCGCTGC TGCGGCTGAT CGGCATCTCG
CCGCTGTATC TGCCGCTGCT CTACCTCCAC GTCGTCGCCG CCGGCCTGCA GGTGGTGCTG
CTGGGCGTGC TCAACGTGTT CTTCTACCTC GACCAGCGCC GCGTCGTGCT CGGCCTGACC
GCCATGCTGG TGGTGCTCAA CGTCGGCCTC ACGGCGCTGT CGGTGCAGCT GGGCGTGCTG
TACTTCGGCT ACGGCGTCGC GCTGGCCATG ATGTTCACGG TGCTGGCGGC GATGCTGGTG
CTCGAGACCA AGCTGCGCAC GCTGGAGTTC GAGACCTTCA TGATGCAATA G
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| Protein sequence | MAGIGFELRR LLKRDSYAGL FQAYTYAGII SSGPWVLSIM AILFIGVLSG LVVSPAGQIS
EFQVAVTWLV MLSLILTGPI QLSFTRWIAD RLFEHKDALI APNFVGVLLV VVLASGVLGQ
ALVPPLFPDQ SNLFRATFSC ALVVLSCIWV ATIFLSGLKQ YKTIVAMFAL GYGLTVVAAL
ALRHYGLEGL LMGFLIGQCV LLGGMLVLIL RTLPSLRLIA FDFLRPGAMY VELVWVGLFF
NLGVWADKLV FWFSPEVSES IIGPLRASVI YDLPSFLAYL SIIPGMAVFL VRIETDFVEY
YDRFYNAVRE GGSLDHIQHM RNQMVFTIRQ GLYEILKIQG ITVLLVIVAG PALLRLIGIS
PLYLPLLYLH VVAAGLQVVL LGVLNVFFYL DQRRVVLGLT AMLVVLNVGL TALSVQLGVL
YFGYGVALAM MFTVLAAMLV LETKLRTLEF ETFMMQ
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