| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0018 |
|---|
| Symbol | |
|---|
| ID | 6159936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 22955 |
|---|
| End bp | 23473 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641662763 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001789059 |
|---|
| Protein GI | 171056710 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0121878 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGT CGCTGATCCT TTGCCTCCTC ACGCTGGTGC TGACCGGCTG CGCCGTGGTC
TCGAAGGGGC CGCCCGGCGT GCCGTTCGAG AAGGGTGCCC GCTGGGCCCT GCTGCCGCTG
GCCAATCACA CCGAGACGCC GCAGGCCGGC CTGCGCGCCG AGGCCATCCT CGAGCCGCTG
CTGCGCCGCC ACGGCGTGAC GCAGCTGATC CATGCGCCGC GCGCCGAAGG CGATGCGCTG
TTCGAGGCCG GCGACCGCAA GAGCCTGGCC GACGCCCGGC GCTGGGCCGG CGAACAGGGC
GCGCGCTACG CCATCACCGG CGCGGTCGAC GAGTGGCGCT ACAAGGTCGG CGTCGACGGC
GAGCCGGCCG TCGGCCTGGC GCTGCAGGTG ATCGACCTGC GCTCGGGCGC GGTGGTCTGG
TCGGCCGTCG GCGGCCGCTC GGGCTGGAGC CGCGAGGCGC TGTCGGCGGT GGCGCAGAAG
CTGCTCGGCG AACTGCTCGA CGGCCTGGTG GTGCCGTGA
|
|---|
| Protein sequence | MFKSLILCLL TLVLTGCAVV SKGPPGVPFE KGARWALLPL ANHTETPQAG LRAEAILEPL
LRRHGVTQLI HAPRAEGDAL FEAGDRKSLA DARRWAGEQG ARYAITGAVD EWRYKVGVDG
EPAVGLALQV IDLRSGAVVW SAVGGRSGWS REALSAVAQK LLGELLDGLV VP
|
|---|
| |