| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0012 |
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| Symbol | |
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| ID | 6160072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 12912 |
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| End bp | 13661 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641662757 |
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| Product | ABC-type transport system ipermease component |
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| Protein accession | YP_001789053 |
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| Protein GI | 171056704 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000582511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGTGGC TGATCGGCTG GTGGCGCACC GTGCACCTGG GCGCGCTGCT GGTGGTGCTG
GCGCTCACGC CGTCGAGCTA CGGCGCGCAC AACCGCCGCG AGATGGCGCG CCACATCGCG
CTCGGCACCG GGCCGGCGCT GCTCGGGTTC ACGGTGCTGA CCACGCTGAT CAGCCTGGTC
GTGATCCGCA TCGTGCTGGT GACCGCGCTC AGCTACGGCC TGAGCCAGTA CGCGCTCGAG
ATGGTGGTGC GGGTGCTGGT GCTCGAGCTG ATCCCGCTGG CCGCGGCGCT GTTCGCCGCG
CTGCGCTGCA CGATCCCCAA CGCCGCCGAG ATCGCCGCCT TGCGCGCACG CGACGGCTGG
GACGCCTGGA GCCCGCAAGG CCTGCAGCGC CTGCGCAGCG AGGTGCTGCC GCGCATGGCC
GCCAGCGTGT TCTGCGCGCT GCTGATGGCG GCCGTCAGCT GCGTCGTCAC GCTGGTGGTG
GCCTACCTGC TGGTGTACGG TTTCACCAGC GCCGGCTTCG GCGCCTACAC CCACACGGTG
GGGCGCGTCT TCAGCCCGGC GGTGGCGCTG ATCTTCGGGC TCAAGATCGT GTTCTTCGGC
CTGACCGTGG CGCTGATGCC GATCGCCTCG GCGCTCGACG CCGCACCGCG CCGGCTGGGC
CGCGCCAGCG CCGAGCTGCA GGGCCTGGTG CGCATGTTCC TGGTCATCCT GCTGATCGAA
GCGGCCTCGC TGGTCGGCAA CTACTACTGA
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| Protein sequence | MQWLIGWWRT VHLGALLVVL ALTPSSYGAH NRREMARHIA LGTGPALLGF TVLTTLISLV
VIRIVLVTAL SYGLSQYALE MVVRVLVLEL IPLAAALFAA LRCTIPNAAE IAALRARDGW
DAWSPQGLQR LRSEVLPRMA ASVFCALLMA AVSCVVTLVV AYLLVYGFTS AGFGAYTHTV
GRVFSPAVAL IFGLKIVFFG LTVALMPIAS ALDAAPRRLG RASAELQGLV RMFLVILLIE
AASLVGNYY
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