Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0011 |
Symbol | |
ID | 6160071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 11932 |
End bp | 12906 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641662756 |
Product | hypothetical protein |
Protein accession | YP_001789052 |
Protein GI | 171056703 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.000604844 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGGACG ACCGATCACC CGACCTGCCC GCACCGCCGC CGGCCCCCGA GCCCGCGCTC GCGTTCAAGG CGACGCTGCT GCTGGCGCTG TTCGTCGCGC TGGTGGCGGG CACCGCGCTC TACCTGATGT ACGCGCGCGG CACCTTCGAG CCGACCCAGC GCGTGGTGCT GGTGGCCGAC GACTCCGAAG GCGTGCGGGT CGGCATGGAC CTGACGTTCT CGGGCTTTCC GATCGGCCGG GTGCGCCGCA TCGAGCTGGC CGCCGACGGC AGCGCCCGGG TCGTGATCGA CGTGCCGCGC AAGGACGCCC ACTGGCTGCG CGAGACCAGC GTGTTCACCC TCGTGCGCAG CCTCGTCGGC GGCGCCAGCC TGAAGGCCTA CAGCGGCGTG CTGACCGACC CGCCGCTGGC CGACGGCGCC GAGCGCCGGG TGCTGGTGGG CGACGCCACC GCCGAGCTGC CGCGGCTGGT GTCCGACGCC CGTGCGCTGA TCCAGAACCT CACCCAGCTG ACCGCCGCCG ACGGTGCGCT GGCCGGCAGC CTGACGCAGG TGCAGACCTT CGCCGAGCGC CTCGCCGGCC CGCGCGGTGC GGTCGGCGCG CTGCTCGGCA ACGAGGCCGA CGCGCGCCAG GTCAGCGCCG CGCTGGGGCG TGTCAACACG CTGCTGGCGC GGCTCGACGG CATCGCCGTC AAGGCCGACG CGCAGGTGCT CGGCCCCGAC GGCGTGGTGC ACGAAAGCCG CGCCGCCATC GGCCAGTTGA ATGCCCTGCT CGGCGACACG CGGGCGACGC TGCAGAAGGT CGACGCCCTG CTGGTCGAGG CCCAGGCCAT CGCCGGCAAC GCGCGCGAGG CCACCACCGA CCTCGGCGCG CTGCGCAGCG AGGTCGACGC CACGCTGCGC AAGGTCGAAC AACTGGTCGA CGAGCTGAAC CGCAAATGGC CGTTCGCGCG CGACACGGAG CTGAAGCTGC GATGA
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Protein sequence | MPDDRSPDLP APPPAPEPAL AFKATLLLAL FVALVAGTAL YLMYARGTFE PTQRVVLVAD DSEGVRVGMD LTFSGFPIGR VRRIELAADG SARVVIDVPR KDAHWLRETS VFTLVRSLVG GASLKAYSGV LTDPPLADGA ERRVLVGDAT AELPRLVSDA RALIQNLTQL TAADGALAGS LTQVQTFAER LAGPRGAVGA LLGNEADARQ VSAALGRVNT LLARLDGIAV KADAQVLGPD GVVHESRAAI GQLNALLGDT RATLQKVDAL LVEAQAIAGN AREATTDLGA LRSEVDATLR KVEQLVDELN RKWPFARDTE LKLR
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