| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0008 |
|---|
| Symbol | |
|---|
| ID | 6160267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 8901 |
|---|
| End bp | 10451 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641662753 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001789049 |
|---|
| Protein GI | 171056700 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000297379 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC TGCCCACCGG TCGCCGCCTG GTCTTCGTGC TGTGCATCGC CGTGGCCGGG
CTCGGCGGCG CCGGCACGGC CGATGCGGTG ATGGCGTCGG CGTGGTTCGA CGGCGGACGC
CCGGGCGCAC AGGCGCAGCA GGCGGTGGCC CTGCTGGCCG ATGCCGCCTC CGACGGCCTG
GAGCCGCAGG ACTACGACGC CGCGGCCCTG CAGCGCGCGG TCGCGCTGGC GGCGCAGGGC
CCGGGGCTCG ATGCGGCGGC GCAGTCGGGC CTGGGCGATG CCCTGAGTGC GGCGATGCAG
CGCTTCCTGG CCGATCTGCA CGACGGGCGC ATCGCCCCGC GGCAGGTCCA CGCCCGCTTC
GACGTGCCGC GTGGCGCGGC CTTCGATCCG GCCGCCGTGC TGGGCGCCGC GCTGGCCGGA
CAACGCCTGC CGCAGGCGGT GCGCGAGGCG GCGCCGCGCC TGCCGCTGTA CGAGCAGCTG
CGCCAGGCGC TGGCGCAGTA CCGCGCGCTC GGCGAGCACC CCGCCTGGGC GCAGAAGCTG
CCGCCGCTGC GCGGGCGCAA GCTCGAGCCG CTGCAGGCCT GGGACGGCCT GCCGCTGCTG
GCCGGGCGGC TGCAGGTGCT GGGTGACCTT CCGGCCGATG TGCCGGTGCC GGTGCGTCAC
GAAGGCGCGC TGGTCGCGGC GGTGCAGGCC TTCCAGCGCC GCCACGGCCT GGGCGACGAC
GGCGTCGTCG GCCGCGCCAC GCTGGCCGCG CTGGCCGTCA CCCCGGCGCA GCGCGCCCGC
CAGATCGCGC TGACGCTCGA GCGCCTGCGC TGGACGCCGC TGCAGCTGGG CCCGCGCATG
ATCGTCGTCA ACGTGCCCGA GTTCGTGCTG CGCGCCTACG AGACCCGCGA CGACCGCATC
GACGTCCGGC TCGAGATGAA GGTGATCGTC GGCAAGGCAC TCGACACCCC GACGCCGCTG
TTCACCGAGG AGATGCGCTT CATCGAGTTC AGCCCCTACT GGAACGTGCC GCGCTCGATC
GCCGGTGCCG AGCTGGTGCC GCGGCTGCAG AGCGAGCCGG CCTACTTCAC GCGCCAGGGT
TTCGAGTTCG TCGGCCGCGA CGGCCGGGTC TCGGCCGGCT TCGGCGACGA ACAGCTCGAC
GCGGTGCTGC GCGGCGAGCT GCGCATCCGC CAGCGGCCCG GGCCGAACAA CGCGCTGGGC
GACATCAAGT TCGTGTTTCC GAACAACGAC GCGATCTACC TGCACCACAC GCCGTCGCCC
GGCCTGTTCG AGCGCGACCG GCGCGATTTC AGCCACGGCT GCATCCGCGT CCAGGAGCCG
GTGGCGCTGG CGAAGTTCGT GCTGCAGGAT CAGCCCGGAT GGGACGAGGC CCGCATCGTC
GAGGCGATGG CGCGCGGCCA ATCGCGCACC CTGCGGCTGG ACCGGCCGGT GCCGGTGCTG
ATCGCCTACG GCACGGTGCT GGTCAGGCAG GGGCGGCCGC ATTTCCTGGC CGACGTCTAC
GGCAACGACC AGCTGCTCGA CGAGGCCCTG CGCAAGCGTC GCCGGCGCTA A
|
|---|
| Protein sequence | MNILPTGRRL VFVLCIAVAG LGGAGTADAV MASAWFDGGR PGAQAQQAVA LLADAASDGL
EPQDYDAAAL QRAVALAAQG PGLDAAAQSG LGDALSAAMQ RFLADLHDGR IAPRQVHARF
DVPRGAAFDP AAVLGAALAG QRLPQAVREA APRLPLYEQL RQALAQYRAL GEHPAWAQKL
PPLRGRKLEP LQAWDGLPLL AGRLQVLGDL PADVPVPVRH EGALVAAVQA FQRRHGLGDD
GVVGRATLAA LAVTPAQRAR QIALTLERLR WTPLQLGPRM IVVNVPEFVL RAYETRDDRI
DVRLEMKVIV GKALDTPTPL FTEEMRFIEF SPYWNVPRSI AGAELVPRLQ SEPAYFTRQG
FEFVGRDGRV SAGFGDEQLD AVLRGELRIR QRPGPNNALG DIKFVFPNND AIYLHHTPSP
GLFERDRRDF SHGCIRVQEP VALAKFVLQD QPGWDEARIV EAMARGQSRT LRLDRPVPVL
IAYGTVLVRQ GRPHFLADVY GNDQLLDEAL RKRRRR
|
|---|
| |