Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0007 |
Symbol | |
ID | 6160266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 7594 |
End bp | 8796 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641662752 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001789048 |
Protein GI | 171056699 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000212043 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTTGCACG AAGGTTCGGA GTCGCCCGAG AGACGCGGTG CGTTGCGCCT CGCCTTGGGC ATCGGCGCGG CCTATGCGGC GTTCGGGATC GCCTGGATCC TGTTGTCGGA CGCGGCCGTG TCGGCGGTGT CGACCGAGCC CGGCTGGCTC GAGGTGGCGC AGCGCTACAA GGGCCTGTTC TACGTGCTGA TCACGGCCGT CGGCCTGGCG GTGCTGGTAC GGTCGGGTCA TCTGCGGCTG ATGCGGGCCG ACCGGCAGGC GCGCTCGAGC GAACTGCGCG TGCAGGACCT CTTCATGCGC CACCCGCAGC CGATGTGGCT GCTCGACTCG CGCGGCCTGG CGTTCCTGAA GGTCAACGAC GCGGCGATCC TGCACTACGG CTACAGCGCC GACGAGTTCG GGCGCATGAC GCTGGCCGAC ATCCGCGCGC CCGAGGACCT CGCGCACCGG CACGAGCCGG CCGGCTCGTC GCTGCAGGGC TCGCCCGATG TCGGCGTGGT GCGGCACCGC AAGAAGTCGG GCGAGGTGAT CTACGCGCAG GTCAGCGTGC ATCCGGTGCC CTTCGACGGC GGCACCGCCG TGATGGCGAT GGCCATCGAC ATCACGCGCG ACATGCTGCT CAAGCAGGCG ATGGAAAACC AGGAGCAGCA GTTCCGCCAG CTGCACCAGA GCCTCGGCGA GGTGCTGTGG CTGGCCAGCG CCGACGGCGG CAACGTGCTG TACGTGAGCC CGGCGATCGA GCGCATCTAC GGCGTCAGCA GCGACGAATT CCTGCGCCGG CCGGGCCTGT GGCTCGCGTG CGTCCACCCG GACGACCGCG CGCTGGCGAC CGCGTCGGGC GCGCGGCTGA AGACCGAAGG CCGATCGAGC GCCGAGTACC GCATCGTGCG ACCCGACGGC AGCGTGCGCT GGATCTCCGA CCGCAAGAAC GTGATCGTCG ACGAACAGGG CCACACGCGC ATGATCGGCG GCATCGCCGA GGACATCACC GCCATCAAGG ACACCGAAGA GACGCTGCGC CACCAGGCCG AGGAACTGGC CCGCCGCAAT GCCGAACTCG AGCGCTTCAA CCAGGCGACG GTGGGGCGCG AGATCGACAT GATCGAGCTC AAGCGCGAGA TCAACCGGCT TCTGCAGCAG GCCGGCCAGC CGCCGCGCCA CACGCTGGCC TTCCTGGACC CGCCCGGCCC GCCGCAGCCC TGA
|
Protein sequence | MLHEGSESPE RRGALRLALG IGAAYAAFGI AWILLSDAAV SAVSTEPGWL EVAQRYKGLF YVLITAVGLA VLVRSGHLRL MRADRQARSS ELRVQDLFMR HPQPMWLLDS RGLAFLKVND AAILHYGYSA DEFGRMTLAD IRAPEDLAHR HEPAGSSLQG SPDVGVVRHR KKSGEVIYAQ VSVHPVPFDG GTAVMAMAID ITRDMLLKQA MENQEQQFRQ LHQSLGEVLW LASADGGNVL YVSPAIERIY GVSSDEFLRR PGLWLACVHP DDRALATASG ARLKTEGRSS AEYRIVRPDG SVRWISDRKN VIVDEQGHTR MIGGIAEDIT AIKDTEETLR HQAEELARRN AELERFNQAT VGREIDMIEL KREINRLLQQ AGQPPRHTLA FLDPPGPPQP
|
| |