Gene Lcho_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0007 
Symbol 
ID6160266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp7594 
End bp8796 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content70% 
IMG OID641662752 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001789048 
Protein GI171056699 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0000212043 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTGCACG AAGGTTCGGA GTCGCCCGAG AGACGCGGTG CGTTGCGCCT CGCCTTGGGC 
ATCGGCGCGG CCTATGCGGC GTTCGGGATC GCCTGGATCC TGTTGTCGGA CGCGGCCGTG
TCGGCGGTGT CGACCGAGCC CGGCTGGCTC GAGGTGGCGC AGCGCTACAA GGGCCTGTTC
TACGTGCTGA TCACGGCCGT CGGCCTGGCG GTGCTGGTAC GGTCGGGTCA TCTGCGGCTG
ATGCGGGCCG ACCGGCAGGC GCGCTCGAGC GAACTGCGCG TGCAGGACCT CTTCATGCGC
CACCCGCAGC CGATGTGGCT GCTCGACTCG CGCGGCCTGG CGTTCCTGAA GGTCAACGAC
GCGGCGATCC TGCACTACGG CTACAGCGCC GACGAGTTCG GGCGCATGAC GCTGGCCGAC
ATCCGCGCGC CCGAGGACCT CGCGCACCGG CACGAGCCGG CCGGCTCGTC GCTGCAGGGC
TCGCCCGATG TCGGCGTGGT GCGGCACCGC AAGAAGTCGG GCGAGGTGAT CTACGCGCAG
GTCAGCGTGC ATCCGGTGCC CTTCGACGGC GGCACCGCCG TGATGGCGAT GGCCATCGAC
ATCACGCGCG ACATGCTGCT CAAGCAGGCG ATGGAAAACC AGGAGCAGCA GTTCCGCCAG
CTGCACCAGA GCCTCGGCGA GGTGCTGTGG CTGGCCAGCG CCGACGGCGG CAACGTGCTG
TACGTGAGCC CGGCGATCGA GCGCATCTAC GGCGTCAGCA GCGACGAATT CCTGCGCCGG
CCGGGCCTGT GGCTCGCGTG CGTCCACCCG GACGACCGCG CGCTGGCGAC CGCGTCGGGC
GCGCGGCTGA AGACCGAAGG CCGATCGAGC GCCGAGTACC GCATCGTGCG ACCCGACGGC
AGCGTGCGCT GGATCTCCGA CCGCAAGAAC GTGATCGTCG ACGAACAGGG CCACACGCGC
ATGATCGGCG GCATCGCCGA GGACATCACC GCCATCAAGG ACACCGAAGA GACGCTGCGC
CACCAGGCCG AGGAACTGGC CCGCCGCAAT GCCGAACTCG AGCGCTTCAA CCAGGCGACG
GTGGGGCGCG AGATCGACAT GATCGAGCTC AAGCGCGAGA TCAACCGGCT TCTGCAGCAG
GCCGGCCAGC CGCCGCGCCA CACGCTGGCC TTCCTGGACC CGCCCGGCCC GCCGCAGCCC
TGA
 
Protein sequence
MLHEGSESPE RRGALRLALG IGAAYAAFGI AWILLSDAAV SAVSTEPGWL EVAQRYKGLF 
YVLITAVGLA VLVRSGHLRL MRADRQARSS ELRVQDLFMR HPQPMWLLDS RGLAFLKVND
AAILHYGYSA DEFGRMTLAD IRAPEDLAHR HEPAGSSLQG SPDVGVVRHR KKSGEVIYAQ
VSVHPVPFDG GTAVMAMAID ITRDMLLKQA MENQEQQFRQ LHQSLGEVLW LASADGGNVL
YVSPAIERIY GVSSDEFLRR PGLWLACVHP DDRALATASG ARLKTEGRSS AEYRIVRPDG
SVRWISDRKN VIVDEQGHTR MIGGIAEDIT AIKDTEETLR HQAEELARRN AELERFNQAT
VGREIDMIEL KREINRLLQQ AGQPPRHTLA FLDPPGPPQP